CANTATAdb - search

Detailed information on CNT30696545

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30117637	Oryza sativa	Oryza nivara	24.79	57.3	99.06	318	forward

Expression of CNT30696545

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MIKIDQLSFHFVKPAALYCSYIVLLLSLVERGISQSKKG*

>peptide 2 (38 aa)
MTERRLCQKCKCCFNALYYSSMLSHIDTFCAIGTVTFC*

Sequence

>CNT30696545
GTCTAGGATGTATATAAAATGCAAAATTGAAGCTTAACTGTACTACTATCCTTTTTCAACATAGTTGTTCTACCAATGGGCACAATTGCATCACTTCATA
GCAATAACTATGCTGCATAAGGATAGTGATTGAGTAAGATGTAATATCTGTGTGATTCTCTAGCTATATCTAATACTTGCATACAGGTCACAGATGCATC
ATGTATAGTTGAGCACACAGTTAGAAATTTACAAATACAATGACAGAAAGAAGATTATGCCAAAAATGCAAATGTTGTTTCAATGCATTATACTATAGCT
CTATGCTTAGTCACATTGATACTTTCTGTGCAATTGGAACTGTGACATTTTGTTAGCTTCGTTTAGTATTTCACACTTCATTGCACACCCTGTGAGTTGG
TTTTCTTTACAAACTGTTAATCAACTTTAGATGGAAGTTCTGGAACATCTCCTATAGAGAAGGACAAATTGTGTGGGCTTGTTGTTGGTTTATTAGACCA
TTAGAGTAGTCTGTGTTTTCATTTTTCAAACTACAAACCAGTGAAAATAAAACTTCTATGGGCCAAGGCTGTCCCTCTGAGCATATCTGTTAGTGGAACT
CACTTCTCTTAAGGCTGATTGTTTGCCACTTTAATCTGTGCAATTGTATGGTACAGTAAGTGTTAATCGCAAGCATGGCATATTTTATTGGCACTCTTAT
TCAGTGAATCTGTTAACCAAATTTTTAGATCCTTATGTTTGAGTTACCATGCTCCTTTTGCACATTTGATAGTATTTATGATTAAAATTGATCAACTTTC
TTTCCATTTTGTTAAACCTGCAGCACTATACTGTTCATATATTGTTCTTCTTTTGAGTCTTGTTGAAAGGGGAATTTCTCAGAGCAAGAAAGGATAAACT
CATTAAACCCTGTTTTGCATTGCCTCTTCTTTAGTTTTTTTTTTTTTAAAAAAACTTTAGGTCTGATGTCCTCATGAGAATGTCAACAGAGATAAACTAC
AGTGTACATCCATGACTGCTTCACAATCCTTGTGTTAAAATTGTTAGTTCCATTTGTCTAGTTGACTACTTCCATTTGTCTAGTTGACTACATTTACTTG
ATTAATTAGCACAAGTTGGGCAGTGTGAAGCGGCTTTCTGTGGAAGAAGTTTGTCAGAGAATTCAAGGTGGCATTGTCAAACGTATCCTCATATTACTGT
TAAGATTTCCACTTGTCATATTTGTTCTAGCCGTTCAGTATTGCATGGTTAAATATCTTAACAAAGTCTCCTGACAATATGCG