Detailed information on CNT30696520


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555063Oryza sativaOryza glaberrima79.7896.6399.54659forward
CNT3068141Oryza sativaLeersia perrieri18.436.4580.92152forward
CNT30596955Oryza sativaOryza meridionalis70.782.8496.4584forward
CNT30106908Oryza sativaOryza longistaminata30.6310097.23253forward
CNT30103734Oryza sativaOryza rufipogon91.0410099.34752forward
CNT30577979Oryza sativaOryza barthii96.4910099.5797forward
CNT30117704Oryza sativaOryza nivara80.6399.25100666forward

Expression of CNT30696520

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MNLASRQESSCYLFSVLRSMQAVPYNLGEVLPCLRGT*

>peptide 2 (36 aa)
MLKAFASFAPAGDFEPYMVTLLGDKAIRLYHENYDK*

>peptide 3 (32 aa)
MPTSTITSLAMKPGQKQSYAQGLRFLCSSRGF*

>peptide 4 (82 aa)
MNKRRFSTHSLILVTVLAVLIVLAMPTALLGLSIGRRALGDPHGVQSTAAMQQDAQAVGPACNTNDPNVPSPCPPPLSPLSP*

>peptide 5 (44 aa)
MFHLHAHLHYHLSRHETWAKTKLCSRPSLPLLQQGILSHIWLHY*

Sequence

>CNT30696520
GTCGGTATAAGAGATAGCAAGAAGGCAAGCTAAAACAAACCAGCTAAGCATAAGGTGAAGGGTAGATAAAATACAACGGTGAAGTTAAAAGAGAAACAGA
GATGAACAAGCGAAGGTTCTCTACACACTCCCTTATCTTGGTGACTGTGCTAGCAGTTCTAATTGTTCTTGCTATGCCAACAGCTTTGCTGGGGCTCAGT
ATAGGGAGGCGTGCTTTGGGTGATCCACATGGAGTTCAATCCACAGCTGCCATGCAACAAGATGCTCAGGCCGTAGGTCCTGCGTGCAACACAAACGATC
CGAATGTTCCATCTCCATGCCCACCTCCACTATCACCTCTCTCGCCATGAAACCTGGGCAAAAACAAAGCTATGCTCAAGGCCTTCGCTTCCTTTGCTCC
AGCAGGGGATTTTGAGCCATATATGGTTACACTATTAGGTGATAAAGCTATACGTTTGTACCACGAGAACTATGACAAGTAAACGTATAGATTAACCAAC
ATCTGAATTGTGACGAGAATTCGTACGTTCTTTCAGAGAATGTTGTACCTTGTGTTATATGGTGCATGTACCTCTATATAGTTGTGTTTGAATAAAACGA
AGACATGAATTTGGCGAGCCGACAGGAGTCATCTTGTTATTTGTTTTCTGTACTACGAAGTATGCAGGCTGTACCATATAATTTGGGAGAAGTTTTACCA
TGTTTGCGAGGTACATAGAGGTATTGAGAAGTTTAGCTATGTAGACAATTGATCGAGAGAGGGGTAAGGTATGGGAATGAATTATTGTAACCGATAGCAG
TGGAGTAAATAGCTAATAAAAAATAT