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Detailed information on CNT30696509


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555228Oryza sativaOryza glaberrima46.5843.4197.95293forward
CNT30110647Oryza sativaOryza longistaminata52.1558.4799.7328forward
CNT30577832Oryza sativaOryza barthii36.0937.5897.8227forward

Expression of CNT30696509

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MHDFDLKLLLCRQSDRGQDGMIKRPVRIIFISSLPEGSGCGTPAQAAAWALAWALASAWVAPASAPAWVAPASCGSGL*

>peptide 2 (49 aa)
MGSVSCRQWRQRCPPTLARSWMAPDQGMARCWRCGAERCSRSCQGRRRGG

Sequence

>CNT30696509
TTTGTCAGATAAAAATAACTTTTTCTTTAACCAATGCTAACCTCTTACGATCCAATGGCTTTGGCTGATACAGTGAATAGTCCGCCACAACAGTACTGAT
TAAATATAAATAAATTATCTTACCATATATAACTGCATTTGATAGAGAAGAAATAGATACAAGTACAAATTAAAACTCCTGTCGATGAAAGCTAATGCAT
GACTTCGATCTCAAACTGTTATTATGCAGACAATCTGACAGGGGGCAGGACGGCATGATCAAACGTCCAGTGCGGATCATATTCATCAGTTCTTTGCCGG
AGGGCTCGGGTTGTGGTACTCCGGCGCAGGCTGCGGCTTGGGCTCTGGCTTGGGCTCTGGCTTCGGCTTGGGTGGCTCCGGCTTCGGCTCCGGCTTGGGT
GGCACCGGCTTCTTGTGGAAGTGGTCTATGATCTTCTTCTTGATGGGACCGCAGATGGTCGCTGACGCGCACAACGCTGATGGGTAGTGTGTCTTGCCGG
CAATGGCGACAAAGGTGCCCTCCGACATTGGCACGATCTTGGATGGCTCCTGACCAGGGCATGGCTCGTTGTTGGCGCTGTGGAGCTGAGCGATGCAGTC
GGAGCTGTCAAGGTCGGCGTCGAGGGGGA