Detailed information on CNT30696501


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002462, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555231Oryza sativaOryza glaberrima101.0720.3794.53567reverse complement
CNT30578145Oryza sativaOryza barthii10089.3396.26561forward
CNT30604093Oryza sativaOryza punctata68.2796.9692.69383forward

Expression of CNT30696501

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MHVVDEDSIWHTMELLCAYGMRSRIWKESKFGTIGYVKFLSCTRGFPKVFRTPSMSLVRGFRLPTSGINRGGA*

>peptide 2 (32 aa)
MKIPYGIRWSYCVLMGCGVEFGRSPNLVRLVM*

>peptide 3 (30 aa)
FQVVCFDIRDYFMIMTSRWILYVCNTVVCY*

>peptide 4 (42 aa)
MVSLFVPCVGDSMSRESICGDGPGVGLGIRQRPWWSEIMRDT*

>peptide 5 (34 aa)
MAYDGVIVCLWDAESNLEGVQIWYDWLCKVSFLY*

Sequence

>CNT30696501
TTTCAGGTTGTTTGTTTCGATATCCGTGATTATTTCATGATTATGACTTCTAGATGGATACTATACGTATGTAATACTGTTGTTTGCTACTAATGAGTCA
AGTTGGAGATAGCTTGGTCTCGGAATATGGTTTCTTTGTTTGTTCCATGTGTAGGTGACTCGATGTCTCGGGAGAGTATTTGCGGTGATGGACCGGGAGT
CGGCTTGGGGATAAGGCAACGTCCGTGGTGGTCAGAGATCATGCGGGATACTTAGGCTAGAGTTGATGCACGTGGTTGATGAAGATTCCATATGGCATAC
GATGGAGTTATTGTGTGCTTATGGGATGCGGAGTCGAATTTGGAAGGAGTCCAAATTTGGTACGATTGGTTATGTAAAGTTTCTTTCTTGTACTAGAGGG
TTTCCTAAGGTGTTTAGGACTCCTAGTATGAGTTTGGTTCGTGGCTTTAGGCTGCCTACCTCGGGTATAAATAGAGGGGGAGCGTGAGGCTTCCCGGTAT
CGCTTTTGAGAGCAATTGAGTTGAGTTTTGAGTTAGGGTTTCGAGTTTAGTCGAAATTTTT