Detailed information on CNT30696472


BLAST search results

BLAST vs Swiss-Prot:
sp|Q93XM7|MCAT_ARATH, E-value = 3e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30578017Oryza sativaOryza barthii98.8197.9497.9333forward
CNT30117741Oryza sativaOryza nivara85.1690.2592.68287forward

Expression of CNT30696472

Peptides detected in this lncRNA

>peptide 1 (58 aa)
DLGNFYKDSICVYRITLFLHPQMRWMTARIRIRIRRRKLRVKKEEDVMIHEFSLVQSE*

Sequence

>CNT30696472
GTGATCTAGGAAATTTTTATAAAGATAGTATTTGTGTGTACAGAATTACACTGTTCTTACATCCACAGATGAGATGGATGACAGCAAGAATCAGAATCAG
AATCAGAAGAAGAAAATTAAGGGTCAAGAAGGAGGAGGATGTAATGATACATGAGTTCAGCCTAGTGCAGAGCGAGTGACCTCGTAGGCCAAGAAGCAGG
CGGCGTTGGCGTCCATGGAGCCGGAGTACTTGGGGTTCTTGTAGTCGTCCACCTGGATGACGCTCTTCACCACGTCCGTCGGGTACACCGACCCCCAGAA
GGAGGCGCCGGCGAGGCCCCCGGCCACCACCAGCGAC