CANTATAdb - search

Detailed information on CNT30696470

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000196, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30592527	Oryza sativa	Musa acuminata	21.6	45.21	93.38	151	reverse complement
CNT30555751	Oryza sativa	Oryza glaberrima	37.63	36.89	97.72	263	forward
CNT30346086	Oryza sativa	Eragrostis tef	35.19	32.45	97.56	246	reverse complement
CNT30363124	Oryza sativa	Sorghum bicolor	32.9	101.32	90.87	230	reverse complement
CNT30595568	Oryza sativa	Oryza meridionalis	27.04	48.71	97.35	189	forward
CNT30103741	Oryza sativa	Oryza rufipogon	37.63	50	100	263	forward

Expression of CNT30696470

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MKKARTEIRKEGVRQDDFGSHVKVLRKVSTGARSRSRHVRPLGRVFAHF*

>peptide 2 (36 aa)
MFARWAECSPTSESSPLERNPCPPQQENGFKATSSL*

Sequence

>CNT30696470
GCGGTACGCTCTGCTCTCTCGCGACCTCTAGTCTAATCAAAAGACTAAAGGCCCCTACGGAAGATGAAAAAGGCAAGGACTGAAATAAGAAAGGAAGGAG
TTCGGCAAGACGACTTCGGTTCACACGTGAAAGTGCTTCGAAAGGTGTCAACAGGTGCGCGGAGCCGGAGCCGGCATGTTCGCCCGCTGGGCCGAGTGTT
CGCCCACTTCTGAGTCTTCGCCTTTAGAGAGAAATCCGTGTCCGCCCCAGCAAGAAAACGGCTTCAAAGCAACTTCGTCACTTTAGTGTACCCATCGGAC
GGCAGCCCTTTCGGGGTTTCCTTAGGGACCGATTCACTCTGCGTAGATTGACTGAACGCAGAAAGCCTTCCACTGGCAGGCGATCGTGTTTTTCACAGGA
TTTCTCGTTACTCATGTCAGCATTCTCACTTCTGATATCTCCAGGTCTTGTCACCAAAAACCTTCCCCGATTGACAGAACGTCCCGCTACTGACACTTGA
AAAAGCAGCTTTCAAGGTCTCGTCGCTTCGGTGGATCACTTGAGACCTGAGACATTTTCGGTGCCATGGTGCTAGACCAGTGAGCTATTACGCTTTCTTC
AAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCGCTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGG