Detailed information on CNT30696454


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30103670Oryza sativaOryza rufipogon39.4795.995.821077forward
CNT30117669Oryza sativaOryza nivara20.81100.5393.66568forward

Expression of CNT30696454

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLFRKTALLQMLHGNITNFSCLLANYFTA*

>peptide 2 (60 aa)
MYLPTSTKYKQAPIVLSNRAKWQQNLHTSNKLQDDLAKINSKTKESKTELKYDLTISQKH*

>peptide 3 (31 aa)
MDRSIPVSLTGDCSVTLGFIDIPVVASGSLL*

>peptide 4 (30 aa)
MENHKPATGTEDLTNLQSIKHNFSAQFPIS*

>peptide 5 (49 aa)
MAMLRVMIICLIFLTQLGSFLLSPFLFLPFLLFLLLHHFPFFLELQPPD*

>peptide 6 (58 aa)
MVSSSQTNLQASSLSSQPCGFSGQSWTVVPLLLGMLLPRHFQQNKALLVLRAQSVAAA*

>peptide 7 (31 aa)
HNKRQLIHKKVRQMDCSGLQREELLGRLTPC*

>peptide 8 (37 aa)
MANKQTNKQPITRACLITSGVGQILLIILILIAIKSR*

Sequence

>CNT30696454
GGCACAACAAACGGCAGCTGATACATAAGAAGGTCAGGCAAATGGACTGCTCTGGGCTGCAGCGAGAAGAGCTGCTCGGTAGGCTGACACCTTGCTGATC
CATCGAAGGTCCTGCAGTTATTTTTAGGGGTCGCCCGGCAGCTGAAGAGCCAGTCCTGGTCACCAACATCTGTATCTTCCATCTGTGTGGGTGATGGTTT
CCAGTTCACAAACAAATCTGCAAGCTTCCTCCCTTTCTTCTCAGCCTTGCGGCTTTTCCGGTCAGAGCTGGACTGTTGTGCCTCTGTTACTGGGGATGCT
GCTGCCAAGACACTTCCAACAGAACAAGGCTCTTCTTGTGCTTCGGGCACAATCTGTTGCTGCTGCTTGACAACAGGTGGTTCGACATGCGCCTTCGGTT
TGTTCAACAAGCCAGGTGGCTCAACACACAACATCTCCGGCTTGCTTAACAAGATAGGTGGATCAGCACACACCTTGGGCTTGTTTAGCAGAGTAGGTCG
CCCTGTGTTAAGCTGGCCCCCAAGTAGGGGACCTCCTGTTTCTTTCCTCAACTGAACTTGAGTACTCTCTCTGTTGAACACTTTCGAAAGAGTGATATGG
CCAGCTATTTGCATTGCTTTCACAGGTGTAGCTTCAACCTCTTGCATCACCTTTGTGGACGTGGGATTAGCTCTCTGCATTGACTTCACAGGTGCAGCTT
CAACCCCTTGCATAACCTTTGTGGGCGCAGGATTAGCTCTTTGCATCACTGCCTTCTCAGATGAAGGCGGATCAACTCTTTGCATCGCAGCAATCGGTGT
TGACTTAGTTCTAACTCTCTGCACCATATTGACTCTTTGCATGGACTTTGCATCATGCTGCTGACTGACTTTTCTTGACTCATCCAAACAATTGCCATTC
CTTATAGACATGTTCTTCTGTTGGGAGACAACTTGTTTCACCACTGACACTGTGTTGACATGAGGCTGGAACTCTCTCTTCCTATTGGCCATGGACAGAT
CCATTCCGGTTTCTTTGACTGGTGATTGTTCAGTAACTCTTGGTTTCATTGACATTCCTGTTGTTGCTTCTGGGTCTCTTCTTTGATTTGTAGGAAGGAG
CCTCATGCTCTTCAGAAAGACTGCTCTTCTCCAAATGCTCCATGGTAACATTACAAACTTTTCTTGTCTCCTCGCCAACTATTTCACAGCCTGAGTGCTT
TCTCTTCTTATGGCCATGCTTAGAGTGATGATCATCTGTCTCATATTTCTCACCCAGCTGGGCAGCTTTCTTTTGTCTCCTTTTCTCTTTCTTCCTTTCC
TTCTTTTCCTTCTTTTGCATCATTTCCCTTTCTTTCTGGAGCTTCAGCCACCAGATTAATCGTCAGTTCCAATTCAGAACAGACGACGGGAATGCAAAGA
GGCATGAAAACAATGCACCAATATTGATACTTTTTCTAGCGTATAATCAATAATCCGGACTCAACAGATAAGAAACCAGTCCCCTTTGAATTATCCAACA
ATGCTTACCTTCAACCTACAAAGTTCACTAGAAGTCTAGAACTGTTTCGCAATGGACTCGTTCTGTTAGTCACCGTGTCAAATACCCTGCTATGTACTTA
CCAACCAGCACAAAGTACAAACAAGCACCCATTGTACTATCAAATAGAGCAAAATGGCAACAAAATTTGCACACTTCAAACAAACTACAAGACGATCTGG
CTAAAATAAACTCCAAGACAAAGGAAAGCAAAACGGAACTGAAATATGATCTCACAATTTCACAAAAACATTAGAGCAAGCCGCAGATGAATAAAGAGCA
AGAAACCAACATTTTAAAAGATTTCATTGTTTAAGAGAAAACATCAAACATATGTTGATAAAAAAAATTAAGTCAAGACATTAAACATTGTAAATAAAAC
ATTTAAGGGCGAGGAAAAAAATGGAACCGGAAAACATTGAAAAAAAAAGTCAAGACAGATGGCAGAAAGGTTTTTGACAATGCAAAGTACACAATGGACA
TTTCCATAAACGGAAGTAACAGAGAAGAGGTCTGTAATTAGAAGCAAACAGCAACAAATTTCACTCTTATTGCCATTTGTGAGTGACTACATCTTGTTGT
CACATTTTACCAAAAAGGACATTTATCTTGTATTACAAGATGTTTTCACCTAAGGAGGAAAAACAAAATCATCTTCTGCAATCAACGATAATCAACGACA
GTTTCACCCAAATATAGCTGAACTTTTGCCTACCAGAGGCATTTGCATTCCATAATGGAAAACCATAAACCAGCAACAGGCACGGAAGACTTAACTAATT
TGCAATCAATCAAGCACAACTTCTCCGCTCAATTTCCAATTTCCTGAACCAATTTTTCTTGAACAGAGAATTTCACCCCAAACAAACAGTTAATCCTGTT
CCCCAAATTCTCCCCAAACAGACAGTTAATCCTAATCCCCAAACATAACCCTAATCCTAGTTTGTTCTCAAGAACATGCCACTATAATCCCAATTGAAGC
AACCAACAAACAAGAACCCAAAAGCAAGCATGGCCAACAAACAAACAAACAAACAACCAATCACCCGTGCCTGCCTAATTACTAGCGGCGTTGGTCAGAT
CCTGCTCATAATCCTAATCCTAATCGCAATTAAGAGTCGATGATTCGACAGCGGCGGCGGCCGTAGCACAGCACAAATTCGGGAAAACCGAATCGGACTT
TGCTCGACGGGCGAGCGAGCGAACGAACC