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Detailed information on CNT30696398


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONPOPT000178, E-value = 2e-153

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671914Oryza sativaSetaria viridis10028.9298.54481forward
CNT30524649Oryza sativaSetaria italica100.2114.6298.55482forward
CNT30641383Oryza sativaNymphaea colorata94.5914.5694.29455forward
CNT30550219Oryza sativaIpomoea triloba10011.0897.09481forward
CNT30516721Oryza sativaJuglans regia20.795.7489100reverse complement
CNT30378673Oryza sativaArabidopsis thaliana61.3323.6696.27295reverse complement
CNT30619000Oryza sativaSesamum indicum10015.7493.56481forward
CNT30730480Oryza sativaCorchorus capsularis99.1738.197.06477reverse complement
CNT30632407Oryza sativaVigna unguiculata101.2518.0396.1487reverse complement
CNT30505427Oryza sativaNicotiana attenuata10017.5997.09481forward
CNT30156864Oryza sativaPistacia vera73.824.1394.08355reverse complement
CNT30185187Oryza sativaSecale cereale10013.698.54481forward
CNT30299883Oryza sativaTriticum aestivum10022.8498.54481forward
CNT30221603Oryza sativaHordeum vulgare10039.9298.13481forward
CNT30387090Oryza sativaTriticum turgidum10017.0998.54481forward
CNT30569654Oryza sativaActinidia chinensis94.591396.48455forward
CNT30543268Oryza sativaBrassica napus100.212196.06482forward
CNT30234026Oryza sativaBrassica oleracea77.5593.9593.57373reverse complement
CNT30511493Oryza sativaSolanum lycopersicum42.222.7198.03203reverse complement
CNT30147391Oryza sativaMedicago truncatula10019.0195.84481reverse complement
CNT30438073Oryza sativaAegilops tauschii93.3555.1698.66449forward
CNT30258698Oryza sativaAvena sativa87.3251.9897.62420reverse complement
CNT30670388Oryza sativaTriticum dicoccoides10017.1598.75481forward
CNT3082633Oryza sativaBrassica juncea17.4625.5310084forward
CNT30140161Oryza sativaLolium perenne10014.1398.75481forward
CNT3017954Oryza sativaZea mays10012.6998.75481forward
CNT30216578Oryza sativaKalanchoe fedtschenkoi10014.4496.67481forward
CNT30655407Oryza sativaRosa chinensis10014.3995.43481forward
CNT30207637Oryza sativaHelianthus annuus10024.5995.43481forward
CNT30628241Oryza sativaDaucus carota10017.8197.09481reverse complement
CNT30688989Oryza sativaTriticum urartu10024.4598.75481forward
CNT30721631Oryza sativaTriticum spelta10013.8598.54481forward
CNT30356932Oryza sativaLactuca sativa99.5824.1996.87479forward
CNT30429739Oryza sativaPapaver somniferum92.5213.8392.13445forward
CNT30571858Oryza sativaVitis vinifera10013.8897.3481reverse complement
CNT3057903Oryza sativaAmborella trichopoda91.0618.2892.47438reverse complement
CNT30108930Oryza sativaOryza longistaminata88.9818.2998.83428forward
CNT3038420Oryza sativaCucumis melo49.916.8197.08240forward
CNT30578511Oryza sativaOryza barthii22.458.3392.59108reverse complement
CNT30499372Oryza sativaDigitaria exilis10014.1598.96481forward
CNT30603680Oryza sativaOryza punctata10012.1998.96481forward
CNT30550626Oryza sativaOryza brachyantha62.79103.0790.73302reverse complement

Expression of CNT30696398

Peptides detected in this lncRNA

>peptide 1 (70 aa)
PRSYAKVPKQSLSGKGSDRAMTTRRWAWKQPSFEESVIAHWSSTMAPKMSQVSSDPPKRRDLESCFFKCQ*

>peptide 2 (45 aa)
MSNEKSCEKHDRLPVEGFLRSVNLRRVNRSLRKPRKGCRPMGTLK*

Sequence

>CNT30696398
AGCCCAGATCGTACGCTAAGGTCCCTAAGCAATCACTTAGTGGAAAAGGAAGTGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGCAGCCATCCTT
TGAAGAAAGCGTAATAGCTCACTGGTCTAGCACCATGGCACCGAAAATGTCTCAGGTCTCAAGTGATCCACCGAAGCGACGAGACCTTGAAAGCTGCTTT
TTCAAGTGTCAGTAGCGGGACGTTCTGTCAATCGGGGAAGGTTTTTGGTGACAAGACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAACGAGAA
ATCCTGTGAAAAACACGATCGCCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCAATCTACGCAGAGTGAATCGGTCCCTAAGGAAACCCCGAAAGGGCTGC
CGTCCGATGGGTACACTAAAGTGACGAAGTTGCTTTGACTACTGAACCATGCCTGGATCGTCGGAGCGAATTGGATGATCG