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Detailed information on CNT30696263


BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 5e-164

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522398Oryza sativaSetaria italica52.856.888.19576forward
CNT30554829Oryza sativaOryza glaberrima90.6582.7697.57989forward
CNT30497363Oryza sativaDigitaria exilis66.5461.6887.74726forward
CNT30117559Oryza sativaOryza nivara90.1992.4899.49984forward

Expression of CNT30696263

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MAWTKKPNMENMARRPFLISFTLSSANASGSSARPSGSKAPPG*

>peptide 2 (39 aa)
MVIRASPKSAEEVDGAARAITGEESAMVAAAIDAVSCES*

>peptide 3 (31 aa)
MRYPSTAPMSTTCTAQMARMLCAWIRLGLPR*

Sequence

>CNT30696263
GAGGGAGTATTTGTTTCCGATCTAATAGAGATGAGAAATCCGCTAATCAGAATAACACCACGGATAAGTACCTAGACCATTAGTTGGGAAACGAATAAAA
TCATTATTGCAAAAACATCATCTTCTTCTTCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCACTAAACCCATCTTCCCCAACCCA
AAGACAACGAACTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTCCCCCACTTCACTTGCCGGGGACGAAGTTGGTGGCGT
ACGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCC
GTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTCATCGGCGAGGCCGAGCGGGTCGAAGGCGCCGCCGGGGTAGAGCGGGTCGACGACC
TCGCCGAGCGGCCCGCCGGCGATGCGGTACCCCTCGACGGCGCCCATGAGCACCACCTGCACCGCCCAGATGGCGAGGATGCTCTGCGCGTGGATCAGGC
TCGGGTTGCCGAGGTAGTCGAGCCCGCCCTCGCTGAAGATCTGCGAGCCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTCCGGGCGAGGAG
CTCCGGGAAGACGCAGCCGAGCGCGCCCAGCATCGCCCACCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGC
CCCGCGGTGTCCCACCCGTAGTCGCCCGGGAACTCGCCGGTGAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGGTCGGCGCCGT
ACCACGGGCTCCCCGACGACGCCGCCGGCTTGGGCTTCGCGGCGGTCTTGCGCATGGTGATCCGCGCCTCGCCGAAGAGCGCGGAGGAGGTCGACGGCGC
CGCGCGGGCCATCACCGGGGAGGAGAGCGCCATGGTGGCCGCGGCCATTGATGCAGTGAGCTGTGAGAGCTGAGAGAGATGGCGATGAGCG