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Detailed information on CNT30696234


BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 3e-91

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30298565Oryza sativaTriticum aestivum53.255.7289.83482forward
CNT30554869Oryza sativaOryza glaberrima75.0670.5499.71680forward
CNT30665775Oryza sativaTriticum dicoccoides52.9857.1491.67480forward
CNT30369182Oryza sativaOryza glumipatula45.4749.0594.9412forward
CNT30108136Oryza sativaOryza longistaminata67.8876.7899.51615forward
CNT30150713Oryza sativaBrachypodium distachyon46.5872.2687.91422forward

Expression of CNT30696234

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MVIRASPKSAEEVDGAARAITGEESAMVAAAIDAVSCES*

>peptide 2 (33 aa)
LVGKRIKSLLQKHHLLLHLLSVHNTNSIIISSH*

Sequence

>CNT30696234
ATTAGTTGGGAAACGAATAAAATCATTATTGCAAAAACATCATCTTCTTCTTCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCAC
TAAACCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTCCCCCACTTCACTTG
CCGGGGACGAAGTTGGTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGC
CGAGGTAGTCGAGCCCGCCCTCGCTGAAGATCTGCGAGCCCGCCTTGAACCACACGGCCTCGCCGAACTTGACGCCGTTCCGGGCGAGGAGCTCCGGGAA
GACGCAGCCGAGCGCGCCCAGCATCGCCCACCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTG
TCCCACCCGTAGTCGCCCGGGAACTCGCCGGTGAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGC
TCCCCGACGACGCCGCCGGCTTGGGCTTCGCGGCGGTCTTGCGCATGGTGATCCGCGCCTCGCCGAAGAGCGCGGAGGAGGTCGACGGCGCCGCGCGGGC
CATCACCGGGGAGGAGAGCGCCATGGTGGCCGCGGCCATTGATGCAGTGAGCTGTGAGAGCTGAGAGAGATGGCGATGAGCGAGCGAGTGTGAGTTGGGA
GTTGGAGATGGCGCGGGAGTTTAAATAGCGCGGGAAGTGAGGGGGGATCGAGTCCTTATCTTGGGAAATCTAAAGGCGGCTCGCGATTGGCGCTCGCGCG
TGGGGC