Detailed information on CNT30696230


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30103474Oryza sativaOryza rufipogon46.6889.56100781forward
CNT30604555Oryza sativaOryza punctata15.397.3491.41256forward

Expression of CNT30696230

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MQIDLSNHRQVGIGGRNMIWIGTDCRRPTIRTIFRRVGSLEHGMARASTSASSSS*

>peptide 2 (42 aa)
MGEHVADVDSPLEINEGHYSLSIIIQSNYPARIIDDHLTQLG*

>peptide 3 (80 aa)
MIRRKLEVEEMESAKKFLEGREVDDERAEFLKTGVPCWYPHDLGTENKYTPGDGSTPHVVVDGRHGCGLSSSRRSSARPG*

>peptide 4 (30 aa)
MAAASPPAGDRPPGRASLSRAEQSRGAGEV*

>peptide 5 (29 aa)
MIWIETDCQPNQRRSIVYSLNSSTEMVRR*

>peptide 6 (39 aa)
MDGGLVEAEFVSCRRWCDSMEVQIQRARRRRAMLWSERR*

>peptide 7 (32 aa)
MMIFFDTLTMMIWNQDKLESAKDDLDRNGLPA*

Sequence

>CNT30696230
AATGGTGAGAAGACCATTAACGATGGCAATGTCCCGGCAAAGAAGCTCATTCGAGAGCTGGTGAGCTCTGGCGGCAGTGGCAGGTAACTTCCAGGACAGC
CATGGGCGAGCACGTTGCAGATGTGGATTCCCCGCTTGAGATCAATGAAGGCCACTACTCCCTGTCCATCATCATCCAGAGTAATTACCCTGCTCGTATT
ATAGACGATCATTTGACGCAGCTGGGGTAGAAGGAGGCTCTCCAGGCTCCACTTGCCATCGCCATGGATGGTGGACTCGTAGAGGCAGAGTTTGTAAGCT
GCCGTAGATGGTGTGACTCGATGGAGGTCCAGATCCAGAGAGCACGACGGAGGAGGGCAATGTTGTGGAGCGAACGCAGGTAATCCCTCTGTAAGCTGGC
GGCGTCGACGTCGACGGGGTCCCGGATGAGCGTGAGCGAAGGGCGGCCACCGGCGCGGTAGACGAGGTCGTAGACTACCTCGCTGTAGAGGCGGAGGAAG
ACGAGGTCGGCGTTGACGCAGCCTACGAGGGGCTCATTGGCGAAGATCCGGGCGGGGTCGCCGGTCGGGCACCAGGCGCAGATGTAGGAGACCTGCGGCG
GTGGGGCGGTGAAGATGGTGATCTCGATTCGATGGCCATTGCCGAGATCGGCCGCGGCGGTGGTGGCGTTCCGGCGGTCGGCGATGTAGGCGCGGACGTC
GAGGAGGATCCATGGTAGAGGCTGGTGTGCATCCAGAGGGTCCCCGCCATGGCAGGGCGGGCGCAGAGTGAGGTGTTCGGTTTTATTCCACATATAGCGG
TCGACGGTAGCCATGGCTGAGGCTTCTCCTCCCGCCGGCGATCGTCGTCCGCCCAGCTGGGCTTAGCTTAAGTAGAGCAGAGTAGAGGAGTCGGAGTCGG
AGACGACATGCAAATCGATCTCAGCAATCACAGGCAAGTTGGAATCGGAGGACGAAACATGATTTGGATAGGAACGGATTGCCGGCGACCGACGATCCGC
ACGATCTTCCGCCGCGTCGGGTCACTCGAGCATGGCATGGCCCGCGCATCCACCTCAGCGTCATCGTCGAGTTGAGGTCGATTGATTTCGCGCTCTGGTT
CATGCGGTTTGTGAATTCTGTACGCTGTGAATGATTCGCAGGAAGTTGGAGGTTGAAGAGATGGAATCGGCGAAGAAATTCTTGGAGGGGAGGGAGGTTG
ATGACGAACGAGCCGAGTTCTTGAAAACAGGAGTTCCTTGCTGGTATCCGCATGACTTGGGAACTGAAAACAAATATACTCCAGGCGACGGTTCTACTCC
ACATGTAGTGGTCGACGGTAGACATGGCTGCGGCCTCTCCTCCAGCCGGCGATCGTCCGCCCGGCCGGGCTAGCTTAAGTAGAGCAGAGCAGAGTAGAGG
AGCCGGAGAGGTTTAACCATGATGATTTTTTTTGACACCTTAACCATGATGATTTGGAATCAAGACAAGTTGGAATCGGCGAAAGATGATTTGGATAGAA
ACGGATTGCCAGCCTAATCAAAGACGCAGCATAGTTTACAGTCTTAACTCTAGTACAGAAATGGTGAGGAGGTAAGAAATAATCGCTGATTACAAGTGAG
ACAAAATGTGTAGTATTTTAATATGTAGAGATTTTGAAACTTAAATTTTCTTGATGTCTATGATGAGTTTACC