Detailed information on CNT30696200


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005015, E-value = 2e-73

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30369710Oryza sativaOryza glumipatula49.3351.0890.73259forward
CNT30107886Oryza sativaOryza longistaminata49.963.1391.22262forward
CNT30117765Oryza sativaOryza nivara46.6798.3988.98245forward

Expression of CNT30696200

Peptides detected in this lncRNA

>peptide 1 (29 aa)
PTPRRRDSRPLPPMYGVRCSFPFTRFPLP*

>peptide 2 (58 aa)
MLGIVSSLFESFQVHAMTCFHEGMGLATLSHDMNSLSHDYCNMLIRLLVFRHNGLIKY*

>peptide 3 (72 aa)
PPPHDAETAAPSLLCTVLGVLSPSRDFLFHDLLHRMMDQETSCKNGMRRRRGRRGVVNWCFPSYLFLFSIKP*

Sequence

>CNT30696200
CCCCCACCCCACGACGCCGAGACAGCCGCCCCCTCCCTCCTATGTACGGTGTTAGGTGTTCTTTCCCCTTCACGAGATTTCCTCTTCCATGATCTCTTGC
ACCGTATGATGGATCAAGAAACTAGTTGCAAAAACGGAATGAGGAGGAGGAGAGGAAGAAGAGGAGTGGTGAATTGGTGTTTTCCGTCATATTTATTTTT
GTTCTCCATAAAACCCTAGGTTGTGGTGCTCCGGATAATGCTTGGTATCGTCTCTTCGTTGTTCGAGTCTTTTCAGGTACATGCCATGACATGTTTTCAT
GAAGGGATGGGATTAGCTACACTGTCGCACGACATGAACTCACTTAGTCATGATTATTGTAATATGTTGATAAGATTACTTGTGTTTAGACATAATGGGT
TAATTAAATACTAGAGTTATTGACCATTGTTTAACTACTCTTTCAAGGATATCCCTGCATGTCCATCAATTGTTGTAACATAACCTTAATCTATATGTTG
ATGCTTCCGTGATGTTTTCTTGTCT