CANTATAdb - search

Detailed information on CNT30696173

BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 6e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30187536	Oryza sativa	Secale cereale	43.49	40.69	94.35	354	forward
CNT30301046	Oryza sativa	Triticum aestivum	52.33	51.51	92.02	426	forward
CNT30393967	Oryza sativa	Triticum turgidum	37.71	51.17	94.14	307	forward
CNT30554920	Oryza sativa	Oryza glaberrima	91.15	100.68	98.92	742	forward
CNT30251938	Oryza sativa	Avena sativa	51.72	53.22	90.02	421	forward
CNT30665949	Oryza sativa	Triticum dicoccoides	52.33	50.12	92.02	426	forward
CNT30473044	Oryza sativa	Saccharum spontaneum	52.33	48.35	90.14	426	forward
CNT30129613	Oryza sativa	Corymbia citriodora	43.86	48.77	89.92	357	forward
CNT30685781	Oryza sativa	Triticum urartu	49.75	46.44	91.11	405	forward
CNT30103236	Oryza sativa	Oryza rufipogon	65.48	54	100	533	forward
CNT30577688	Oryza sativa	Oryza barthii	54.3	69.94	98.64	442	forward
CNT30604588	Oryza sativa	Oryza punctata	43.12	48.82	92.02	351	forward

Expression of CNT30696173

Peptides detected in this lncRNA

>peptide 1 (74 aa)
MAWTKKPNMENMARRPFLISFTLSSANASGSSARSSGKTQPSAPSIAHREWITSSSRFLANVSGSAESPAVSHP*

>peptide 2 (39 aa)
MVIRASPKSAEEVDGAARAITGEESAMVAAAIDAVSCES*

Sequence

>CNT30696173
ATCTAATAGAGATGAGAAATCCGCTAATCAGAATAACACCACGGATAAGTACCTAGACCATTAGTTGGGAAACGAATAAAATCATTATTGCAAAAACATC
ATCTTCTTCTTCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCACTAAACCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGG
CCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTCCCCCACTTCACTTGCCGGGGACGAAGTTGGTGGCGTGGTCGGCGAGGTTCTCGAG
GGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAAC
GCCTCGGGGTCATCGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCGCCCAGCATCGCCCACCGGGAGTGGATCACCTCCAGCTCCCGGTTCTTGGCGA
ACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCACCCGTAGTCGCCCGGGAACTCGCCGGTGAGGTAGCTCGGCGGCTCGCCGGAGAGCGGGCCGAG
GTAGAGGACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGACGCCGCCGGCTTGGGCTTCGCGGCGGTCTTGCGCATGGTGATCCGCGCCTCGCCGAAG
AGCGCGGAGGAGGTCGACGGCGCCGCGCGGGCCATCACCGGGGAGGAGAGCGCCATGGTGGCCGCGGCCATTGATGCAGTGAGCTGTGAGAGCTGAGAGA
GATGGCGATGAGCG