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Detailed information on CNT30696105


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003046, E-value = 6e-26

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30109989Oryza sativaOryza longistaminata12.5721.4383.33114forward
CNT30103444Oryza sativaOryza rufipogon71.2210099.85646forward

Expression of CNT30696105

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MAGGAEIGVLLDSATDCSCALLLLIHSPSIVVQLLLLYVFFL*

>peptide 2 (77 aa)
MERGMGGRRRLRTVGGAGGCNRLLRSSPAGSEEWQEEQRLAFCSTRLQTARAHCSFLSTAHLLLFNYCFCMCFFFDI*

Sequence

>CNT30696105
TGGGATAAATGCTTATTAGGCCCTATTTCGAAACCTAACTACTAATCTGATCGTACTTTTTTAGATTGCTTATTTGATCCTACTTTTCAAAAAGAAAAGA
AATATAATAACTTTTCATAATGACCATAATACCCTTGAAGCAACCCTATCTATTCATCTCTCGTATCCTCTCTCTCGGCTAGTGGCGGTGGCAACGTACG
GAGGGGAGTGGCGGCGGTGGCGGGTCGCGAAGGAAGGGGATCCGCGCTAGCACCAACTCGCGGAGGGAGGGAGTGACAGCGGCAACACCGGGGGGGGGGG
GGGGTGGTGAAGGGAGGGATCTGCAGTGGCGCCAGCTCGGGCCGCCCGATGTGGGGTGTGGGAGGTCGTCGCTAGGCACAAAGCGAGGCTTCGGAGGTTG
CGGCCGCCTGGTGGGGAGGGAGGCGTTGGGCTCACCGTGTGGGGCGCCGGAGGTCGTCGCCGGGCATGGAGAGAGGCATGGGAGGTCGCCGCCGCCTGCG
CACAGTGGGAGGCGCGGGAGGTTGCAACCGCCTGTTGCGGAGCTCACCTGCTGGGAGTGAGGAATGGCAGGAGGAGCAGAGATTGGCGTTCTGCTCGACT
CGGCTACAGACTGCTCGTGCGCACTGCTCCTTCTTATCCACAGCCCATCTATTGTTGTTCAACTATTGCTTCTGTATGTGTTTTTTCTTTGATATATGAA
ATCTGGGGTTTTGTTAAGTAACTAGCAAAAATGACCGTGCATTGTAACGGGTGAAAAAAAATGCAATAACAATATACGCTTTTCATATATAACCATATCA
ATCATAATGTTTGTATGAATCGCTGTAGCTAAGACAATCATAAGGAAAATTGAAACATCTTCGATGTAATGGCCCAACCTCGACGATGGCAACCTTACAT
ATGCTTG