Detailed information on CNT30696057


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000172, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553305Oryza sativaOryza glaberrima25.95093.65646forward
CNT30103365Oryza sativaOryza rufipogon38.3799.4898.22957forward
CNT30117501Oryza sativaOryza nivara86.6565.3997.412161forward

Expression of CNT30696057

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MDRVLGRQLYLLIKTFYVIFLEICLGKSLP*

>peptide 2 (32 aa)
LRAPRPHTESRACAARTSRRRGCRAANAIAPR*

>peptide 3 (29 aa)
MLGQKSAVKTCGILDFVRDNSHVWYGHIL*

>peptide 4 (38 aa)
MLIPIAKLFCLQIKLHAMMNILLVIMPCLDYCLPLIPS*

>peptide 5 (37 aa)
MCVPTIDLGIGTDKHRRFPISKIGGLQSKMKIVAETE*

>peptide 6 (75 aa)
APSPAPPHRVARVRRANITSPRLSCRQRHRAALASRRHLDLALAPPCLSPSPAGELILSASPIKGPQEPRARPPL*

>peptide 7 (50 aa)
MGYCMMIFMLLEPLPERREGGRPQKTMTTQWREAILGITMDGGQNRRCLM*

>peptide 8 (49 aa)
SEPRAPTPSRARAPREHHVAAAVVPPTPSRRASVPSPSRPRLSPAVPKP*

>peptide 9 (42 aa)
MIRVRSCSRSRPPVDCLWHVNRALILFCLPLLFSGSCWPTWP*

Sequence

>CNT30696057
GCTCCGAGCCCCGCGCCCCCACACCGAGTCGCGCGCGTGCGCCGCGCGAACATCACGTCGCCGCGGCTGTCGTGCCGCCAACGCCATCGCGCCGCGCTAG
CGTCCCGTCGCCATCTCGACCTCGCCTTAGCCCCGCCGTGCCTAAGCCCTAGCCCAGCTGGCGAGCTTATCCTCTCCGCCTCACCTATAAAAGGCCCCCA
AGAGCCCCGAGCTCGTCCTCCCCTCTGAGCCTTTTCTACTCCCTCAAAAACATTTCGTCGAACACCTTGTGGGCGTGCTGCACCTTCTTCTCCGCTCCAC
CACCGCAGCCGATCTTCGTCATTCTGCCGTCTCTCGAATTTGTGTATCGGTTAGTCGTGAGGCAACGTATGCAGCTTCCAGGAGGTGAAGGTTGATCAAG
ATTATATCAATAATAAGGACGATTCTGAGCAGGCAATTCATCACTATTCTTTGAACATGTTGATCCCAATTGCGAAATTGTTTTGTTTACAAATAAAATT
GCATGCAATGATGAACATCCTACTTGTGATTATGCCATGCCTTGATTATTGTTTACCCCTTATTCCTTCGTAACCATGATTACGTATGAGTCCCTAGTCA
ATTATGACAATTGCTTAGAAATGCTATTCTAGAATCATGCATACTCATATTTATCAAATGCTATATGCTTGGGCAATTACCTTTGGGGAAGGTAATTGAG
ATGCGGCATGTGGAGACATGAGCGCCACATTGCCATGAAATTGATGACATGATTTGTGAAAGAAAAATAAAGTGAAAACAACTGTTTTCGACTGGGGCGG
ACGGAGGATTTGGGTGGTATCTGGAAAAGGCTAGTACCGTCCCCGGTCAATTAAGGACCGAGCCATGATTTAAGCATGAAACGACCCCCGTACAACCGCA
CTTCTCGTATGGGTATAGACCTAGCGGATTAGATAGCCGAGCGGAGGCAGTATCCCTGCATAGATGGTTCACCCCTGAGTGAGGCAGGTGCGCTATGGTG
GGACAGCCGTTGAGGTAGGGCCGAGAGGCGTGCCCTACATCGGTGTCGCCATTGGTAGGACTGCCATGAGTGTGTGTGAGAGAGAACTTAACTTGAACCA
TAATTTAATATGTATGTGAGACTTCTCTTTCCCTGGAGCGCCAGAACTCCTCTCACTGCTAGAAACATGGACGCCTAGAGTGCATGAGGATTTAAGTTCA
TGGAGCGGGTACTGCCAATGCGAGGTTATCAAAAAGCTTTGCCGTGACGCGTCCCATGTGTTGGGACGAGGCTCATGTGTTGGGCAGTCGCGGAGTGCGG
ATAAAGTGTATATCCACTGCAGTGTGAGTAAACCAAATCTATTTGAATAGCCGTGCTAGCAGTTATTGAGCACCGGGACGTGTATTACACTTGGCTAGAC
TCTAAATTCTTAACTTGTGTGGGATGGGATATTGCATGATGATTTTTATGCTGTTGGAGCCACTTCCTGAGAGGAGGGAAGGTGGACGTCCTCAGAAAAC
CATGACGACTCAATGGCGAGAAGCTATCCTTGGGATCACAATGGATGGTGGACAGAACCGTCGTTGTTTAATGTGAACACTGGTATTTAAACTTGATCAG
TCTATGCTAGGTCTTAGGCTTGTGAAAAGATTTGGAAAACTTGCTTTGCGCAAAGGAATCTAAAGCCATTCCTTGAAATACCCTCTATCATATGCATCGT
TGCTGTGGTGGCTTGCTGAGTACGATTGGTACTCACCCTTGCTGTTTATATATCTTTTAGGAGAGTGTTGAAGAGAAGCCCTTGTCGGTACGCTTGCGTA
TCCAACAAGATGATCAGAGTGCGGTCTTGTTCTAGGTCTCGTCCCCCAGTCGACTGCCTGTGGCATGTTAACCGGGCCCTTATATTATTTTGTCTTCCGC
TGCTGTTCTCTGGTAGTTGTTGGCCTACCTGGCCCTAATGTAAGTATTTAACTCTTTTAACCTGAATTCATTCGTGATATGTTGTGATCCAACTATGTAT
GTGTGTACCAACTATTGATCTAGGGATTGGTACAGATAAACACAGAAGATTTCCGATTTCCAAAATCGGGGGTCTACAATCGAAGATGAAGATTGTCGCG
GAAACAGAGTAAGAATCGGCTGAAGTCCGGATCGACTACGATTGGATCGGCTGAGTTGGAGTCAGACTTGGTTAGGTGATGCAGCCGATTCCAACAATAC
GACTTGGTGTACGACATCGGGTTGGGTTGAGGTGCTTCAAGATGATTGCCATGCATGGATAGAGTTCTGGGAAGGCAATTGTATCTATTAATTAAGACAT
TTTATGTAATTTTCTTAGAGATATGCTTGGGCAAAAGTCTGCCGTAAAGACTTGTGGTATCTTAGATTTTGTTAGAGATAATAGTCATGTCTGGTATGGA
CATATCTTGTAATTCTCGGGTATGAATAGACCCCGAGCCCTATGTAATTAAACACACACGTTCAATACAATTTCGGCGCATCGCCACCTTTTTG