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Detailed information on CNT30695966


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30597242Oryza sativaOryza meridionalis54.52100.293.87489forward
CNT30370210Oryza sativaOryza glumipatula77.742.9593.4697forward
CNT30117497Oryza sativaOryza nivara100.6787.4294.68903forward

Expression of CNT30695966

Peptides detected in this lncRNA

>peptide 1 (82 aa)
LVSFRGRTEVPRLGFAGNGGAISGAGEISPRLRRNPPISGNVTASNRNTVALWTPLLRLCSSPGFHSSLQAEPLRHELHQHL*

>peptide 2 (66 aa)
PCLVSRKNRGTPPRIRRERRRHLRRRRDKSSTPSQSANLRERDRVKSEHRRALDAAASPLLVARLP*

Sequence

>CNT30695966
CCTTGTCTCGTTTCGCGGAAGAACCGAGGTACCCCGCCTCGGATTCGCCGGGAACGGAGGCGCCATCTCCGGCGCCGGCGAGATAAGTCCTCGACTCCGT
CGCAATCCGCCAATCTCCGGGAACGTGACCGCGTCAAATCGGAACACCGTCGCGCTCTGGACGCCGCTGCTTCGCCTTTGCTCGTCGCCCGGCTTCCATA
GTTCGTTACAGGCTGAGCCACTTCGTCACGAGCTTCATCAACACCTGTAGATCAAGAATCCCGAAGGAATCGACGCGAGGTGGACCACAGTGGGAGATCC
TCTTCTTCTTCTCCAATCCCAGCCGCCGACGCCATTCCTTTCTTTCTCCTTCTCTGTAGAAGCCTGGGGATACGCCGTCGACGACGACCGTAGCAGCCGC
GCCGTCGCCGAACCAGTACACCGTCGCCAAGACTTCGCTGAGCTGCGTTTGCTTCTTGACGATTCGCAGCCGAGTCTCGAGGAGGCCTACTTTGTAGCTG
AGCAAGGAGTGGAAGAGCAAGGCAAGCCACCTCCCTTCTTTGATCACATTGAACCTATGATTTGGATGTTTTTGAAAAGTTTGCAAAATATGCATGTCTA
TTGTACACTAATCCATTAAAATCTTGTAAAATTTGTTAGATCAACTCCTTAACTTGCATTATCACCTGAACTCCACAAAAGACCTTAACCATTATTCCAA
AACCTTAGGAACAATCCATTGTGTCACATTAAGAATGATGTTTGAGATAGCAAGTCTATAAAAATGCTCAGCCATGCTTAGTGATGAGTTTACTTACCAT
TTGGGCTCAATTACATATATTAAATGATTTATTTTATGATCTGGATTAAAATGATAAAATGTGATATTTGTTAAATAAAATGTTGGAAAATGTGGAT