Detailed information on CNT30695938


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002886, E-value = 8e-112

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554769Oryza sativaOryza glaberrima71.2510096.41223forward

Expression of CNT30695938

Peptides detected in this lncRNA

>peptide 1 (68 aa)
TLQLRKIRSSWRLKPTFGKASKKRSSWRMKALVSSSCLPSSACGRRPSLPLFLVCLCVCWAFAAHVIN*

>peptide 2 (34 aa)
DAAASEDPLFVEVEADVWESEQEEEFLEDEGFGV*

Sequence

>CNT30695938
GACGCTGCAGCTTCGGAAGATCCGCTCTTCGTGGAGGTTGAAGCCGACGTTTGGGAAAGCGAGCAAGAAGAGGAGTTCCTGGAGGATGAAGGCTTTGGTG
TCTAGCTCGTGCCTGCCGTCAAGTGCCTGTGGTCGTCGCCCTAGTCTTCCGCTGTTTCTCGTTTGTCTTTGTGTGTGCTGGGCCTTCGCTGCCCATGTAA
TAAATTAACTATTTACGCTTCCGCTTGTTAAACTCTGAATTGTATCAACTTTTGGTGTACCTTGCCTCCTGGGACAAGGATTAATGCACGCACGTAAGGA
ACGCCCGTTGGGT