Detailed information on CNT30695887


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006674, E-value = 8e-150

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552045Oryza sativaOryza glaberrima64.679.8394.66281forward
CNT30370076Oryza sativaOryza glumipatula66.6797.9793.79290forward
CNT30107095Oryza sativaOryza longistaminata70.875.1296.75308forward
CNT30117152Oryza sativaOryza nivara39.0837.6999.41170forward

Expression of CNT30695887

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MPVEWSRHSCSVVCYSFIFRCVECYSLRGTIYLCNNLLFANIK*

>peptide 2 (55 aa)
HMYCLCLFLYCFVDFCLIALVSDVPEESVSVEEGSEAFAEAQEEEYLSEGDDLED*

Sequence

>CNT30695887
TCCACATGTACTGTTTATGCTTGTTTTTGTACTGTTTTGTTGATTTTTGTTTAATTGCTTTAGTTTCCGACGTTCCGGAGGAGAGCGTTTCCGTTGAGGA
AGGTTCCGAAGCGTTTGCGGAAGCCCAAGAAGAGGAGTATCTCAGTGAAGGTGATGATCTGGAGGATTAGGCTTGTTCTTGGTTAAGATGCCTGTGGAGT
GGAGTCGCCATAGCTGTTCCGTAGTTTGTTATAGTTTTATTTTCCGCTGCGTAGAATGTTATTCTTTGAGAGGAACTATCTACCTCTGTAATAATTTATT
ATTTGCGAATATTAAATAGTTATTTATTTGTACTCTATTATCAATTTGTTATTGTGTGCCTCGGTTGATTCCTGGACGAGGGTTTAACACACATGTAAGC
GTTCGGAATTTTGGATAGAAATTCCGGGCGTGACA