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Detailed information on CNT30695806


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30107123Oryza sativaOryza longistaminata38.6155.1898.99495forward
CNT30577449Oryza sativaOryza barthii95.0981.4898.031219forward
CNT30117429Oryza sativaOryza nivara100.3178.3299.141286forward

Expression of CNT30695806

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MCMHSCWLKEIIQGDMMPKQEDRGQGCSR*

>peptide 2 (38 aa)
MLFQCNLLLHLGPPVYSSLVEKQSLQTWEFKIAKKKLS*

>peptide 3 (39 aa)
MYYALPMQFVASSWAPCVLILGRKTELTNLGVQNSQKKT*

>peptide 4 (39 aa)
MPAGKVISASFLVKMGRYVARAEFGNSKPLLVNSREIFI*

>peptide 5 (41 aa)
MNAILASIAQVDSGDILEKKKSIVVMRKAQEEDKRTSEAAS*

Sequence

>CNT30695806
ATGAAAAGTAGAGAGGGGGGTGATCAAGTGGAGCATGGGATAACTACTGGGTGATGCATTAGTTCAGCTAAGTTGAGCGGGGCACGTTTGGAATGACTTG
GCACATGCTTGCTTGCTAACTTATGTAATTCGTGGGTATCCTCATAGTTAAGCTATGTTTCACTTGAGGTATGCCTGCAGGTAAGGTAATTTCTGCTAGC
TTTCTTGTAAAGATGGGAAGGTATGTAGCTAGGGCTGAGTTTGGGAACTCCAAGCCTCTTTTAGTAAATAGTAGAGAGATATTTATTTAATTCCTGAAAA
ATTGTGTGAAGTGAGAGTTACTAGTAGTGCCTGCAGGTGATATATGGCATAAGTAACCCAACAGGTGACAAGTAACCCCCGTTATTCTTGTAATGTATTA
TGCTCTTCCAATGCAATTTGTTGCTTCATCTTGGGCCCCCTGTGTACTCATCCTTGGTAGAAAAACAGAGCTTACAAACTTGGGAGTTCAAAATAGCCAA
AAAAAAACTTAGCTAGCTAGGTGAAAGTAATGCTTAATTAATATTTTTTGTGTATTGTCCTCTTGCAAAGTTGATGTGCACAGGCAACTGCATCAGATCT
ATAACATACCCTACCATATTACAGTGAAACGGAGGAGATCTCAGGGAATGGCTGAAGTTGCATTGGACCAATCTTGGTCCGACAAGCCTCCAAGACAAAC
TTGGATTCAATTTCGTTCTGGCAGATCGGTATGAATGCCATCCTCGCAAGCATTGCGCAAGTTGATAGTGGTGATATTCTTGAAAAGAAAAAATCGATAG
TGGTAATGAGAAAAGCACAGGAGGAGGACAAGAGGACAAGTGAGGCGGCAAGCTAAGAAGACGGTGGCTTGGCGTGCTTGGCGTAATCTAACTTGATTAC
CAGGCAGAGGCAGACAAACACTGGATTCTAGCTCGATGGAAGATGTTCCTGCCACATGTGCATGCATTCATGCTGGCTTAAGGAAATTATTCAGGGAGAC
ATGATGCCCAAGCAAGAAGATCGAGGGCAGGGCTGCTCCAGATGAGATCATCAGCCGCAGCTACACCTCTACCTCTGCTTCTTGTTTTCCTCTACCTGTA
GGCTGTAGCAACAACAAGTTTTCCTCTACCCCTCTGCTTCTTGTTTAGCAACAACAATAGTACTACTGCTCTGCTTCCTGTGTGTCATCTGCATCAATGA
TCTGTGATGATCTATTGGATGTATCTCAGTATCTGTGCTTATAGCTTTCCACCATCGAATCGAACATGCACGACTCATTTTC