CANTATAdb - search

Detailed information on CNT30695784

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006839, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30103054	Oryza sativa	Oryza rufipogon	72.34	80.47	98.53	408	reverse complement

Expression of CNT30695784

Peptides detected in this lncRNA

>peptide 1 (56 aa)
RKLAYFSLPYVYIILGKTCEYILVLNPVSAISGEESGFELCFLCGHCSTEGGEGNE*

>peptide 2 (35 aa)
MCHVPRCTLTLLWYLLCLLIACDESVRLVAFLGTS*

>peptide 3 (28 aa)
MEESSFLRSSMSNFLKQSSLKKLHNSIIA

Sequence

>CNT30695784
AGAAAACTTGCATACTTCTCTCTCCCTTATGTATATATAATTTTGGGTAAGACTTGCGAGTACATTCTTGTACTTAACCCGGTGTCTGCAATTTCAGGAG
AGGAATCCGGTTTTGAGTTATGCTTCTTGTGTGGTCATTGCTCTACCGAGGGCGGCGAGGGCAATGAGTGATCTCTTGCGGCTTGGCTCTTGCCCGGTTG
GTTTGCCCTAGCGGAGTTGTGGCACCACCGGTTTTATCTTTTGCTTATGAACTCTAATTGAGACTTCCACTGCTATATTTATGTGTTGTATGTTGGGACC
TCGGACCCTATTATGTGTCATGTACCTCGCTGCACTTTAACCCTATTATGGTACTTGCTATGTTTATTAATTGCTTGCGATGAAAGTGTGAGGCTAGTCG
CATTCCTGGGGACTAGCTAATTATATCAAACAGTGAAGGAGGAAATATCTTCTCAAATTTGCACAGAGTTACCGCAATGGAGGAATCTAGCTTTTTAAGG
AGCTCCATGTCTAACTTCTTGAAGCAAAGTTCTCTGAAAAAGTTGCACAACTCAATTATTGCCT