Detailed information on CNT30695742


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT007427, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554901Oryza sativaOryza glaberrima65.37100.1996.72519forward
CNT30596675Oryza sativaOryza meridionalis55.7944.7583.07443forward
CNT30370717Oryza sativaOryza glumipatula60.5899.5986.49481reverse complement
CNT30108911Oryza sativaOryza longistaminata79.4728.9190.81631reverse complement
CNT3099691Oryza sativaOryza rufipogon20.0317.2183.02159reverse complement
CNT30117788Oryza sativaOryza nivara51.0110099.51405reverse complement
CNT30604461Oryza sativaOryza punctata55.2953.2185.65439reverse complement

Expression of CNT30695742

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MEFGDEARSVGKRAPKAFHQVLTGRKRRSYADSVAV*

>peptide 2 (88 aa)
MKLQAHRPIIGDAAPCACDSGHTRWNSEMRLDPLERGLRKLSIKYSRAENGGRMQIRWPFEVSSVAGGRIGFWHLEYSNLISCCSSMM*

Sequence

>CNT30695742
TGATGAACCCTGAGTTCCTCTCGACACTCAAGGCTGTTGTTGGCCCGATCTTTCGGTGAGTTGTGATAACTACGATTTGGGAGAAACGTTGACGATCCGA
CTACAACCGTACGAGACGTTGTGTTGCGCCTTAGCGATCGATACACCTCTCCGTGGGTTGTTGATCTTGCCGGTGCAGATCAACCCTATTCCTGCAAGCA
AATCGAAGAAACAAGCAAGAACAAGATAAAAGCAATCTGATATTGCAAATAGGAATTTAATACGAATGATAAGTTGGGGTTCCGAAGAACAAGCAGACGG
ACGGTCTAGCCGACACGCGCGCTGCAAGCAAGTAGCAATGGCTAAACTTTAATCTAACAAAACCCAAGAAACCCTGAAGGGGTACCTAGCTATATAAATA
GGGGTGGGAGGACGACCTAGGGGTGCCTAGGGTCGTGCTCCACCTGGCTGGGGCGCACCCCACATGGGCCCCACCTGGGCCGGGATCCCAAATGAAGTTA
CAAGCCCATAGGCCCATTATAGGTGACGCAGCACCTTGTGCGTGTGATTCCGGCCACACGAGATGGAATTCGGAGATGAGGCTAGATCCGTTGGAAAGAG
GGCTCCGAAAGCTTTCCATCAAGTACTCACGGGCCGAAAACGGAGGTCGTATGCAGATTCGGTGGCCGTTTGAAGTCAGCAGTGTAGCAGGTGGCCGAAT
TGGATTTTGGCACTTGGAGTACTCGAACTTGATATCTTGTTGTTCATCCATGATGTGAGCAACGGATGTATCCGTAGTAGCCATGGTCACATCA