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Detailed information on CNT30695689


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004282, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673303Oryza sativaSetaria viridis17.5255.5688.11185reverse complement
CNT30596384Oryza sativaOryza meridionalis65.0669.8998.4687reverse complement
CNT30108677Oryza sativaOryza longistaminata80.9734.8798.95855forward
CNT30102152Oryza sativaOryza rufipogon75.4799.7598.75797reverse complement
CNT30117997Oryza sativaOryza nivara81.3455.8599.53859reverse complement

Expression of CNT30695689

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MVRPHIAESRRQDLSNKYSFAPFALRSEEH*

Sequence

>CNT30695689
AAATAAAGTTATGCTCTCTCAAGAATGAGCATGATATTGAAAAAAAAAAGAGAGAGAATAATGTAGCCATGCCCTCTCCTTATTTATAAAAGAAGGATTT
TAGGAGTAAGCACAAAGGAGAAGCGTTTTGATGCAGCAACGGGGGTTCCCGATCTTTCGATGAGAGGAGGATAAACTTCGATTTGGGGAAGGATACGACG
TTGGCGGTCCGACTACAACTACCACAGGGGTGCTGCGCCTTAGCAACCGGTACACCGACTCCACGTTGTTGCTGTTCTTGCCGTGCCAAGAACAACCTTG
AACCTGCAAGCAATCGAAGAACAAGCAAGAACAAGTTGACAAGGAAACAGCTCACGGCACTTGTCAAATGATGAAACTTAAACAAACCAAAATGGGGTTC
TGAATACAAGTATCCGGGTGGTCTAGCCGACACACGCGAGTACAAGGAAGTAGCTGCAGCTAAACTTACATCAAAACAAAACCCAAAGTGCAAAATGGTG
GCTGCTAAGAGTTTATATAGGTGGAGGAATGACCAGGAGAGGAGGTGGGAGCAAACCCTAGGTTTTGTGGACCCCTAATGGGCTGTAATGATACAAGGCC
CAAGCCCAAGTTTCTGATGTAAAGAACTATTTTCGTCATTCTGAGCAGCCTGGGTCAAAGTTGATGGTGAGGCCACACATAGCTGAAAGTAGACGACAAG
ATCTTTCCAACAAGTACTCATTTGCCCCGTTTGCCCTCCGGAGTGAAGAGCATTGACTTCATCAAATCAGCGCTGCTAGTGCTGCTTGCGATTTGGTTCC
TCTCCCATATTCCTAACAACAAGTAGATCACAACAACCATTTAGTAGCACCCAATTCTGAGAAGAACTTGTATGATTAGCTAGGAATGACTTTACCTGAT
AATTAAGTTCACGAGCTCGAGCTCTAGTCATTGGTCCTTGCTGTGCAATAGGCGTGGTTGTATCGTTGGAAGGGATGTCCTCATCACGTTTTTTCTTTAT
TTTAAACATTTCATTTCCACCATATATCACACACACACACACACACTTTGCACGAT