CANTATAdb - search

Detailed information on CNT30695575

BLAST search results

BLAST vs Swiss-Prot:
sp|P36213|PSAD_HORVU, E-value = 3e-49

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT302080	Oryza sativa	Zea mays	40.06	61.21	93.89	262	forward

Expression of CNT30695575

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MSKTFLPVNLTSMGLTFLPMLRKFWPTPCLPALGPSRMMAAPPVGISNTCSLGDVHVMT*

>peptide 2 (32 aa)
MAMVVGGGERRVPCGGFDSSGVVWRREISEME*

Sequence

>CNT30695575
ATCCCACCATCGATCGATTACACCATCATCAATAACTGAAGAGCAGCCTGACAGATGATTAAAATTACATGTCCATCCACCCAAAACACAAGTAATTAAT
AGGTCGATTATGAGAGAAGAAGAAGAAGAAGAAGAAGTCTAGATGTCGAAGACGTTCTTGCCGGTGAACTTGACCTCGATGGGGCTGACGTTCTTGCCGA
TGCTGCGGAAGTTCTGGCCGACGCCCTGCCTGCCGGCGTTGGGGCCCTCGCGCATGATGGCGGCGCCGCCCGTGGGCATCTCGAACACCTGCTCCTTGGG
CGACGTCCATGTGATGACGTAGAACTCCTCCACCTGCGCCTTCCGGAGGAGTCCCCCCGTGCTCCCGCCGAAGATCGGGGACGGCGTGTTGGGGTCCAGC
TGCGGCGGCACGAACCCCGCGGGGGCTGGCTTCTTCTCCTCCGTCGCCGCCGCGGCGGGCTGATCCTCCGCCGCCGCTCTGAGGGAGGTGGGTGGCACTT
GGCGGCGGAGGCTTGCGTGGCCATGGCCATGGTGGTCGGAGGAGGAGAGAGGAGGGTACCGTGTGGTGGATTCGATTCGAGTGGTGTGGTGTGGAGGAGA
GAGATATCGGAGATGGAGTAAGAAGAAGAGAGGGGAAATGGGTGAGGAAGTGGA