Detailed information on CNT30695553


BLAST search results

BLAST vs Swiss-Prot:
sp|P29302|PSAD_NICSY, E-value = 1e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522541Oryza sativaSetaria italica45.9552.894.9255forward
CNT30710396Oryza sativaGlycine max26.6730.2785.81148forward
CNT30122581Oryza sativaPhyscomitrium patens28.4722.4182.28158forward
CNT30299532Oryza sativaTriticum aestivum41.9845.6994.85233forward
CNT30228866Oryza sativaAnanas comosus42.3426.8988.09235forward
CNT30362113Oryza sativaSorghum bicolor24.6820.6995.62137forward
CNT30370885Oryza sativaOryza glumipatula66.6753.31100370forward
CNT30148202Oryza sativaBrachypodium distachyon41.0841.8390.35228forward
CNT30499040Oryza sativaDigitaria exilis37.8430.8890.95210forward
CNT30558912Oryza sativaPanicum hallii12.0726.0795.5267forward

Expression of CNT30695553

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MSAASPVPRRRGGGTWRRRLAWPWPWWSEEERGGYRVVDSIRVVWCGGERYRRWSKKKRGEMGEE

>peptide 2 (37 aa)
MSKTFLPVNLTSMGLTFLPMLRKFWPTPCLPALTFSG*

>peptide 3 (59 aa)
MERVDERGFAGAQAARRWHLAAEACVAMAMVVGGGERRVPCGGFDSSGVVWRREISEME*

Sequence

>CNT30695553
TACATGTCCATCCACCCAAAACACAAGTAATTAATAGGTCGATTATGAGAGAAGAAGAAGAAGAAGAAGAAGTCTAGATGTCGAAGACGTTCTTGCCGGT
GAACTTGACCTCGATGGGGCTGACGTTCTTGCCGATGCTGCGGAAGTTCTGGCCGACGCCCTGCCTGCCGGCGTTGACCTTCTCCGGGTAGACGCCGTCC
TTGGGGTGGAGGTACTGCACCTCGCCATTGGGGAAGACGCGGTAGAACTGGTAGTTGATCTTGTACTTGGAGCGGAGCCTGGTGCCCAGGGCCAGGCACT
GCTCCTTCCTGGCCAGCTTCAGCAGGTGGGTGCCCTCGAGGTGGGCATGGAGAGGGTGGATGAGCGCGGCTTCGCCGGTGCCCAGGCGGCGAGGAGGTGG
CACTTGGCGGCGGAGGCTTGCGTGGCCATGGCCATGGTGGTCGGAGGAGGAGAGAGGAGGGTACCGTGTGGTGGATTCGATTCGAGTGGTGTGGTGTGGA
GGAGAGAGATATCGGAGATGGAGTAAGAAGAAGAGAGGGGAAATGGGTGAGGAAG