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Detailed information on CNT30695489


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0J8M2|FER1_ORYSJ, E-value = 1e-55

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675769Oryza sativaSetaria viridis29.0434.4191.12214forward
CNT30523259Oryza sativaSetaria italica16.6923.2592.68123forward
CNT30307945Oryza sativaTriticum aestivum28.933.690.61213forward
CNT30398830Oryza sativaTriticum turgidum28.929.590.14213forward
CNT30442884Oryza sativaAegilops tauschii15.4723.2293.86114forward
CNT30248543Oryza sativaAvena sativa14.9328.890110forward
CNT30670012Oryza sativaTriticum dicoccoides28.7731.2290.09212forward
CNT30469592Oryza sativaSaccharum spontaneum16.1525.9388.24119forward
CNT3011815Oryza sativaZea mays29.8526.2888.18220forward
CNT30683972Oryza sativaTriticum urartu28.930.9190.14213forward
CNT30596741Oryza sativaOryza meridionalis100.2791.6992.42739forward
CNT30370929Oryza sativaOryza glumipatula10096.09100737forward
CNT30103152Oryza sativaOryza rufipogon89.6979.26100661forward
CNT30584428Oryza sativaEchinochloa crusgalli28.920.4692.49213forward
CNT30117338Oryza sativaOryza nivara10094.7399.73737forward

Expression of CNT30695489

Peptides detected in this lncRNA

>peptide 1 (44 aa)
LLINCSFKYMEYVFDSSIYDTVMHAYMTPKCDMDMIKQVQQNVH*

>peptide 2 (72 aa)
MYTSSGTCSSTSPSGVISFTLYVACIRSLSPSLLLAGSTDTRAGAGAVATRRDIGNRTWLLSAVAAMAAIAN*

Sequence

>CNT30695489
GCTTATTAATTAACTGTTCTTTCAAATACATGGAGTACGTATTTGACAGTAGTATATATGACACAGTAATGCATGCATATATGACACCAAAATGTGATAT
GGATATGATTAAGCAGGTGCAGCAAAACGTACATTAATTAAACAACAACAATTAACCCTCGGGCACGCCTGTGTTTTGTTATCTCGCTCAACATATACGT
ACGTAATACTTTGCTTGCATAGCATAGGGACGACGACATTATATTCTTAATTGATAAACTCAAGAACGCATGGAGATGGATCGAGAGATTTATAAATATG
GAGCTTGCTTGATTGATTAGATGAGGTCGTCCTCCTTGTGGGTCTCGATGACGACGTCGGACTTGGGGTAGGCGTGGCAGGTGAGGACCCAGCCGGCGGC
AACCTGGTCGTCGTCGAGGAAGCTCTGGTCGGACTGGTCGATCCCTTCCTCCTCCGCCTGGTCCAGGATGTACACGTCGTCCGGCACCTGCAGCTCCACC
TCGCCGTCCGGTGTGATCAGCTTCACGTTGTACGTCGCCTGCATCCGCAGCCTGTCTCCCAGCTTGTTGCTCGCCGGCAGCACCGACACGCGCGCCGGCG
CCGGCGCCGTCGCCACCCGCAGGGACATCGGCAACCGGACCTGGCTGCTCAGTGCCGTCGCCGCCATGGCTGCTATAGCTAATTAAGCTAGCTAGCTGCT
GCTGCTAGGTAAGGTAGACGAGGAGGAGAGGAGTGAG