Detailed information on CNT3069548


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 2e-157

BLAST vs NONCODE:
NONMEST001181, E-value = 4e-97

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316435Quercus suberCorylus avellana71.6966.4591.36509forward
CNT30512897Quercus suberJuglans regia8057.5588.73568forward
CNT30701201Quercus suberQuercus lobata86.3497.9294.13613forward
CNT30500521Quercus suberCoffea canephora63.2461.3485.08449forward
CNT3020302Quercus suberCitrullus lanatus83.149.5883.05590forward
CNT30525184Quercus suberPhaseolus vulgaris86.239.0883.66612forward
CNT30625880Quercus suberDaucus carota86.250.6684.8612forward
CNT3032754Quercus suberTheobroma cacao83.2445.0585.45591forward
CNT3025177Quercus suberPopulus trichocarpa85.7762.2784.73609forward

Expression of CNT3069548

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MVMVFPVKVFTKICIPPRKRSTKCRVDSF*

>peptide 2 (94 aa)
SLETTTEAKDKVQSRLLLDIVISQSPSIFKLPSIFKLLSCKDKPLLVWWDTFLVLYLSLDIVNSVRAFNLHGYGFSCQSLHKNLHSTTQTQHQV*

Sequence

>CNT3069548
AAGCTTAGAAACCACCACGGAGGCGAAGGACAAGGTGCAGAGTAGACTCCTTTTGGATATTGTAATCAGCCAGAGTCCTTCCATCTTCAAGCTTCCTTCC
ATCTTCAAGTTGCTTTCCTGCAAAGATAAGCCTTTGTTGGTCTGGTGGGATACCTTCCTTGTCTTGTATCTTAGCCTTGACATTGTCAATAGTGTCCGAG
CTTTCAACCTCCATGGTTATGGTTTTTCCTGTCAAAGTCTTCACAAAAATCTGCATTCCACCACGCAAACGCAGCACCAAGTGTAGGGTTGACTCCTTTT
GAATATTGTAATCTGCTAAGGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAGCCTCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGGATCTT
AGCTTTAACATTATCGATAGTATCTGAACTCTCAACCTCCAAAGTAATTGTTTTGCCAGTCAAGGTCTTCACAAAAATTTGCATTCCACCTCGGAGCCGG
AGCACCAGGTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCTGCGAGGGTGCGACCATCTTCGAGCTGCTTTCCGGCAAAGATTAACCTCTGCTGGTCTG
GTGGGATACCCTCCTTGTCTTGGATCTTAGCTTTGACATTGTCGATGGTGTCTGAGCTTTCCACCTCAAGGGTGATGGTCTTGCCAGTGAGTGTCTTAAC
AAAGATCTGC