Detailed information on CNT30695440


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SJY5|PUMP5_ARATH, E-value = 1e-101

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546427Oryza sativaIpomoea triloba7.421.382.6192forward
CNT30568460Oryza sativaActinidia chinensis17.3825.3580.56216forward
CNT30588133Oryza sativaMusa acuminata29.4445.4784.7366forward
CNT30372Oryza sativaZea mays18.549.1593.48230forward
CNT30228849Oryza sativaAnanas comosus25.7425.6287.19320forward
CNT3068023Oryza sativaLeersia perrieri8.9337.583.78111forward
CNT30684412Oryza sativaTriticum urartu8.2127.4290.2102reverse complement
CNT30330081Oryza sativaDioscorea rotundata16.4950.4980.98205forward
CNT30577309Oryza sativaOryza barthii37.17100100462forward

Expression of CNT30695440

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MGRQAKVQSLNQAVVVIIHSSSISSRGSTSRSNTRGGLFVVIIVAVAFRTRRR*

>peptide 2 (49 aa)
MFITLVFTTSTGLDAAAATSPAAKLATTCVPSPSAPGPRRARMASLAWS*

>peptide 3 (61 aa)
MVADTPEKSPAAPSARRICAPTAIGPGFLGGAITSCGIATACPAWNASAGRSAACAGATAAA

>peptide 4 (31 aa)
MARFTVSDDPRHRLRTPSSRAIRPMASPTLR*

>peptide 5 (36 aa)
MLCLKDNHVISQEKQLVSAQTPHKRNRRNICHGEAG*

>peptide 6 (42 aa)
MATSAGFPTAAPTPPAMSPAAILRWSGSTPPFSWVHFFFSMS*

Sequence

>CNT30695440
AGTGAGATCCTAAATATTCTTGATGACTCCGAAAAGCTGTTGATCTAAATTTACTGTAAGAGTTCCAAAAAGCATGATTCAGAACAAGTTTGCATGCAAG
GTTGGGAAGCCAAAGCTTAAAGGCTAAATTTGAACCAGGATGCTGTGCTTGAAGGACAATCATGTGATTTCTCAAGAGAAACAACTGGTTTCTGCTCAAA
CTCCGCACAAAAGGAACAGAAGGAACATATGCCATGGGGAGGCAGGCTAAGGTACAATCTCTCAACCAGGCTGTAGTAGTAATTATTCATAGCAGCAGCA
TCAGCAGCAGAGGTAGTACTAGCAGAAGTAATACTAGAGGTGGATTGTTCGTCGTCATCATCGTGGCGGTGGCCTTTAGAACTCGACGCCGTTGAAGACC
TTGCGCACCTGCTCGAGCGTGACGAAGAGCACGACGGTGAAGGGGCCCTGGCGCGACACGGTGGGGATGAACCCCTTGTACAGCGCCATGACGCCCTCCG
ACCGCACCGTCTTGAGCGCGCAGTCGATGGCGCCGGAGTAGGGCGGCGGCGCGCCGGGCGCCACCTTCATGTTCATCACCCTCGTCTTCACCACGTCCAC
GGGGTTGGACGCCGCGGCGGCGACGAGCCCCGCGGCGAAGCTGGCCACGACGTGCGTGCCCAGCCCGTCGGCGCCGGGGCCGCGGCGCGCCAGGATGGCC
TCCTTGGCCTGGTCGTAGGTGGCCAGCTGCGACGCCGTGACGATCATGGCGCGGTTCACCGTCAGCGACGACCCGCGCCACAGGCTGCGGACGCCCTCGT
CGCGCGCCATCCGGCCGATGGCGTCCCCGACGCTGCGGTAGTTCCGGCGCTCGGCGAGCGGGAGCCGCCCGTCGGCCTGCATCCGCACCATGGCGACGTC
GGCCGGGTTCCCCACGGCGGCGCCGACCCCGCCGGCGATGAGCCCAGCGGCGATCTTGCGGTGGAGCGGCAGCACGCCGCCGTTCTCCTGGGTCCACTTC
TTCTTCAGTATGTCGTAGAGCCCCATCCGGGTGGTGGAGTAGAGCGTCTGGCGCAGCATGGTGGCCGACACGCCGGAGAAGAGCCCCGCCGCGCCCTCCG
CCCGCAGGATCTGCGCGCCGACGGCTATCGGCCCGGGCTTCCTCGGCGGCGCAATCACGTCATGCGGGATCGCCACGGCCTGCCCCGCGTGGAACGCCAG
CGCCGGCCGCAGCGCCGCCTGCGCCGGCGCGACCGCCGCCGCC