Detailed information on CNT3069543


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315343Quercus suberCorylus avellana20.4437.2493.08159forward
CNT30516813Quercus suberJuglans regia20.5710.4495160forward
CNT30698212Quercus suberQuercus lobata31.4937.0197.55245forward
CNT30729814Quercus suberCorchorus capsularis21.0820.0787.2164forward
CNT3043425Quercus suberPrunus dulcis21.9827.887.72171forward
CNT30164954Quercus suberPistacia vera10.9327.7888.2485forward
CNT30235661Quercus suberBrassica oleracea16.9727.8581.06132forward
CNT3061002Quercus suberArabidopsis lyrata16.8423.6980.92131forward
CNT30601253Quercus suberFraxinus excelsior11.3138.2688.6488forward
CNT30111654Quercus suberFicus carica17.2220.384.33134forward

Expression of CNT3069543

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MNWIQRKIYLYNFTFGLYMLDWWERYLFNTLIIMLMWFILYNGSRYVTEFCKSLLG*

>peptide 2 (38 aa)
EGPNKQSYVKFLTNKMECPVPQIFIILYLIPEPQNLIR*

>peptide 3 (51 aa)
MSSMYLLKKKKTILHVFYTLVIRISDHFLLFYSNFPLIRIFNRFRLLKVFS*

Sequence

>CNT3069543
AGGAGGGCCCAAATAAACAAAGTTATGTTAAGTTCTTAACAAATAAAATGGAGTGCCCTGTGCCCCAAATATTTATAATTTTATACCTGATTCCTGAACC
TCAGAACCTGATACGGTGAGGTGAGGTGAGATGAGATGAGTAGTTCAGACTTGAGAGAGGCGGAGAGCAGAGAATCAGAGAGAGGCTGAGGCTGAACAGT
GGAGACTGGAGACTAGAGCGAGGCGGAGAGCGGAGAGCGGAGAGCAGAGACTAGAGAGAAAGGTTTCAGAATTATGAACTGGATTCAGCGCAAGATCTAT
CTTTACAATTTTACTTTTGGGCTCTACATGTTGGATTGGTGGGAGCGTTATCTTTTCAATACTTTGATCATCATGTTGATGTGGTTCATTCTTTACAACG
GATCACGATATGTAACTGAGTTCTGCAAGAGCCTTCTAGGGTGAGAGGACCTGAACTGGAATCAACTTGAAGGATGACAAACAAGGATGTATTGTGGAAG
ATTTAATGTTGCTGCAGCATATCCCACTCTGATTGGAATGGACTTGGGAGTATTTTAAGTTGTAAAGACAACCGTGTATGTCCTCAATGTACTTATTAAA
AAAAAAAAAAACTATCCTCCATGTATTTTACACCCTTGTCATAAGGATTTCAGACCATTTTCTGTTGTTTTATAGCAATTTCCCTCTCATAAGGATTTTT
AACCGGTTTAGATTGTTGAAAGTGTTCTCATGAATAATATTCTTTATTTCTGGTCACTGAATGAAAATACTTCTTTAG