Detailed information on CNT30695384


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT001053, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596332Oryza sativaOryza meridionalis40.5898.592.85657forward
CNT30117459Oryza sativaOryza nivara21.6852.7899.43351forward

Expression of CNT30695384

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MVIILNPDRDDVVSYDQFPSSTPGTPELLSLLLTSRSERMRI*

>peptide 2 (29 aa)
MTKLMNIGKSWTAGKAYIYCSRIFMKLFE*

>peptide 3 (47 aa)
MRRRRRRPPAAGKPAPLLPFLSVQPKERTKRREEEEEKKKKEKKIKD*

>peptide 4 (42 aa)
YLQMELHLSLSLPCPAMTAPGRSPSLELRKPNPCATNSASPR*

>peptide 5 (83 aa)
MHGAREHHAPPASPPSSRRKTGTPPPLPLCSTEGENEETGRRRRKEKEREEDKRLTGLEDSSDTLDNISQSQDIEQGKLPYTF*

>peptide 6 (64 aa)
LPTNGASSLSFSPMSGHDCPRPISLIGASQAKPLRHQLRLAEVIPFFPFSPFLPPHSSHHRHFF*

Sequence

>CNT30695384
TCTACCTACAAATGGAGCTTCATCTCTCTCTTTCTCTCCCATGTCCGGCCATGACTGCCCCCGGCCGATCTCCCTCATTGGAGCTTCGCAAGCCAAACCC
TTGCGCCACCAACTCCGCCTCGCCGAGGTGATTCCATTTTTCCCGTTTTCCCCTTTTCTTCCACCCCATAGCAGCCACCATCGCCACTTCTTTTAGTGGC
CGGAGCAAGTTCTTGCAGCTGCCGTTCCAGCCATCCCTCTCTCTCCCTCCGCCAGCCACCACCCTCTCCGGATGCACGGTGCTCGGGAACACCATGCGCC
GCCGGCGTCGCCGCCCTCCAGCCGCCGGAAAACCGGCACCCCTCCTCCCCTTCCTCTCTGTTCAACCGAAGGAGAGAACGAAGAGACGGGAAGAAGAAGA
AGAAAAGAAAAAGAAAGAGAAGAAGATAAAAGACTGACGGGTCTTGAGGATTCTTCTGACACATTAGATAATATCAGTCAATCTCAGGACATCGAGCAAG
GCAAGTTACCATATACCTTTTGATCATTTAAGCCTATATTTTATAAATTATTTATTTATAGCCTTCTATTCAATATTCTATTTTTTATGCATAAATCAAC
CATAGAAACCCAGACAATTTAGTATTGCTTATTTTGCTTACAATCTGGTTAAAATACCTTATACTTAGATTGGGACAGTACGTAAGATTTGGTTGATTCC
TGGGTGGCTAGTACTGTCTCAATCGATATAAGTTTTGCCAGGTACTTATGTCAAACGAACGGGTACGACCGCAGTTCTAGAATGGGGACAGACCTAGTCA
TTATGTTACTTAGCAATGTGATACCTCTGTGTAGTGGTTCTTATTTTTAAGTCCTCGAGCAGGAGGCAACTATAGCTGCGAAGGGAAATTTCTACCATTA
CCATGTACTGGTAATTGGTTTGTTGAGCTCAATTATAATTATGGTTATAATTCTAAACCCTGATCGAGATGACGTGGTGTCATACGATCAGTTCCCCTCA
AGTACCCCGGGAACGCCAGAACTCCTCTCGCTGCTGTTAACGTCACGTTCAGAGCGCATGAGGATATAAGTTCATGGAACAGGTACCACAATTGTTAATA
ACCTAATACTGGGCCATGACTAAGCTAATGAATATTGGCAAGTCGTGGACTGCGGGTAAAGCGTACATCTACTGCAGTAGAATATTCATGAAACTATTCG
AATAGCCGTACTCACGGAATTGAGTACCGGGACTCATATGGTACCCTGGTTAGAAACCTAAAGTATATATTTCACAAACTCTTGCTTTAATATTTCCAGA
TTGTCTATTATTGCTTTCTGCAAAGAACTCTACTCTATGCCAACGCATAACATGTTTCCATGGTAGCTTGCTAAGTATTGTGAATACTCACCCTTGCTCT
CATTAACCTTTTTCAGATTTGGGTCAAGAGGAAGACCCCTATGACTATTATTATGATGACCCTGATAGCTTAGAAAATCCCTAGAGGTTATACCTTCCTA
GTCAGAATGTACTAGAACTTCCGCTGTGTAATATTAGTACTTATGTTTAATTAGGTGAGTACCTATTCTTGTAAAACCCTTAGAATTGTAAACTTTAACA
TATGCAATGAAGAACCAGC