Detailed information on CNT30695339


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6YZZ7|GL83_ORYSJ, E-value = 5e-80

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30297939Oryza sativaTriticum aestivum39.9436.0180.58139forward
CNT30227178Oryza sativaHordeum vulgare63.7927.1782.88222forward
CNT30240637Oryza sativaAvena sativa56.0350.1381.54195forward
CNT30665085Oryza sativaTriticum dicoccoides39.9437.0782.01139forward
CNT30130807Oryza sativaLolium perenne41.9517.5585.62146forward
CNT303472Oryza sativaZea mays25.5731.2383.1589forward
CNT30688823Oryza sativaTriticum urartu39.9413.5382.01139forward
CNT30117462Oryza sativaOryza nivara92.8286.3699.38323forward

Expression of CNT30695339

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MHHLGEEPVRVGCNKTNIKCSLKHSEKLSSTRMHMWWVDTHWRVVDAS*

>peptide 2 (50 aa)
MRASEMPRVLRLVTLDPTLFIVFLGMSNLAALKKSSDVTFIGFLQGNPFTR

Sequence

>CNT30695339
GTCTAGGTTCATTTGAAAGTGAATCATTGCCTTAGGGAACACGAACACATCACCCTTATGCACCACCTTGGAGAAGAGCCTGTTAGGGTTGGATGTAACA
AAACCAACATAAAGTGTTCCCTCAAGCACAGTGAGAAGCTCAGTAGCACGAGGATGCACATGTGGTGGGTTGACACCCATTGGCGCGTAGTCGATGCGAG
CTAGTGAGATGCCAAGAGTGTTGAGGTTGGTGACATTAGACCCGACTTTATTCATAGTATTCCTTGGCATGTCAAACTTGGCCGCGTTGAAGAAGTCGTC
CGATGTGACATTCATTGGGTTCTTGCAAGGAAACCCATTTACTCGCAC