Detailed information on CNT30695338


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30108096Oryza sativaOryza longistaminata37.2511.7297.69130forward
CNT30577247Oryza sativaOryza barthii37.2531.8697.69130forward
CNT30117408Oryza sativaOryza nivara66.4844.0299.57232forward

Expression of CNT30695338

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MERVLQSDIHRNNFYQYGTVTAAGGELVMMSRH

>peptide 2 (31 aa)
MGWRLLLRSPEMAPPRRAANSYPRLFWSEGR*

>peptide 3 (90 aa)
PNGNKSPKFDTRRRRRRRGLRRRRRLFFSALSRSRRWARDGMGWDGVSCCARRRWLRLAEQQTVIQGCFGVKADNHLGHKNRWYGESSTK*

>peptide 4 (70 aa)
PTETNPPNLIRAGGGDDGGCGGGGGSSSPPYPVLGDGLGTGWDGMASPAALAGDGSASPSSKQLSKVVLE*

Sequence

>CNT30695338
CCCAACGGAAACAAATCCCCCAAATTTGATACGCGCCGGCGGCGGCGACGACGGGGGCTGCGGCGGCGGCGGCGGCTCTTCTTCTCCGCCCTATCCCGTT
CTCGGAGATGGGCTAGGGACGGGATGGGATGGGATGGCGTCTCCTGCTGCGCTCGCCGGAGATGGCTCCGCCTCGCCGAGCAGCAAACAGTTATCCAAGG
TTGTTTTGGAGTGAAGGCAGATAACCACCTAGGTCACAAAAACAGATGGTATGGAGAGAGTTCTACAAAGTGACATACATCGTAACAATTTCTACCAATA
TGGCACAGTGACGGCAGCTGGTGGAGAGTTAGTGATGATGTCGCGGCAC