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Detailed information on CNT30695317


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005030, E-value = 4e-113

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30110252Oryza sativaOryza longistaminata31.2410099.3284forward
CNT30115706Oryza sativaOryza nivara26.480.5496.67240forward

Expression of CNT30695317

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MHGELRDIEIGEESGGFSLHGCSSNMTLFPSIWSSISIIAARRWLQLIRC*

>peptide 2 (47 aa)
GGGRENPFFFLPFHLHCLFFLFFLKLSSHLTSPPQIPSNSPRSIPAC*

>peptide 3 (38 aa)
GGQRKPLLLPPLSSSLLVLSFLPQAELSSHFSSPNPIQ*

>peptide 4 (32 aa)
MSYASCVVIALPRAARAMSDLLQLGSCPVGLP*

Sequence

>CNT30695317
GGGGGGGGCAGAGAAAACCCCTTCTTCTTCCTCCCCTTTCATCTTCACTGCTTGTTCTTTCTTTTCTTCCTCAAGCTGAGCTCTCATCTCACTTCTCCTC
CCCAAATCCCATCCAATAGCCCAAGATCAATCCCTGCATGTTAGATCACAACAATCCCCATCATCCAAGCTTTCCATCCATCCCAACATCTTGCACATGC
ATGGAGAGTTGAGAGATATCGAAATAGGAGAAGAGAGTGGTGGTTTCAGCCTGCATGGTTGCAGCAGCAATATGACTTTGTTTCCCTCCATTTGGTCATC
CATCTCCATTATTGCAGCTAGGAGGTGGCTGCAGCTCATCCGGTGTTAATCTCTTTTGATTTCAGTTGAAGCAGCCCTAGGCAACGTCTCTTACCGTCAG
CCCGAGGCCTTGCTCCGTCTCTTGCCATCAGCCCGAGGCCTTAGCCTCGCACGACCCTACGTCCAGGTTGCTGCCATGTGAGCGAAGTCTGGTGGAAGTT
GGAGAAAAGGGGGAGTGAAAATAGAAATCGATTTCTGAGATAGCTTTTGAGCTGAAAGAGATTCGGAGATTCCGGAGAGTAACGAGTCATATCCCGAGGA
GGATAGTGACTACCCTCAGCAGCAAGGAGAGGATTCCGGTTATGAGTTATGCTTCTTGTGTGGTCATTGCTCTGCCGAGGGCGGCGAGGGCAATGAGTGA
TCTCTTGCAGCTTGGCTCTTGCCCGGTTGGTTTGCCCTAGTGGGGTTGTGGCACCACCGGTTTTATCTTTTACTTATGAACTCTATTTGAGACTTCCGCT
GCTATATTTATGTGTTGTATGTTGGGACCTCGGACCCTATTATGTGTCATGTACCTCGCTGCACTTTAACCCTATTATGGTACTTGCTATGTTTATTAAT
GGCTTGCGA