CANTATAdb - search

Detailed information on CNT30695239

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30103119	Oryza sativa	Oryza rufipogon	77.54	100	100	428	forward
CNT30577412	Oryza sativa	Oryza barthii	100	90.05	99.82	552	forward

Expression of CNT30695239

Peptides detected in this lncRNA

>peptide 1 (56 aa)
SSSLIFLMSSLTSSAVINPAFLTSFGATSFLPFLGGEMSPSPKACLFSGGNLSLGS*

>peptide 2 (63 aa)
MSWDSLESWRESLRGGEGSRCCLDFRGGDKSSCPPATSLPFGDGVSCRLRLCLGGDRSLPAASL

>peptide 3 (36 aa)
LILLNLPDVLFNFLCCHQPSFPHLLRSHFLPTLPWR*

>peptide 4 (32 aa)
MSRAPPWWREVFGFFRIMPPLPAWWREVLWLL*

Sequence

>CNT30695239
TCTCATCCTCCTTAATCTTCCTGATGTCCTCTTTAACTTCCTCTGCTGTCATCAACCCAGCTTTCCTCACCTCCTTCGGAGCCACTTCCTTCCTACCCTT
CCTTGGAGGTGAAATGTCCCCATCACCCAAAGCCTGCCTTTTCAGTGGTGGCAATTTGTCCTTGGGTTCATGAGAGTCGTGCCGCGTCCGTCTGCGTGGG
GGAGAGAGGTCTTCGGGCTCTTCTGAATCATGTCTCGTGCGCCTCCGTGGTGGCGAGAGGTCTTTGGGTTCTTCAGAATCATGCCGCCCCTTCCGGCGTG
GTGGAGAGAGGTCCTGTGGCTCCTCTGAGTCATGCCTGGTACGCCTTCGTGGTGGTGAAATGTCCTGGGATTCCTTGGAGTCATGGCGAGAGAGCCTGCG
TGGAGGAGAGGGGTCTCGTTGCTGCCTAGACTTCCGCGGTGGTGACAAATCATCATGCCCCCCAGCTACCTCACTACCCTTTGGTGACGGCGTGTCTTGC
CGCCTTCGCCTCTGCCTCGGCGGCGACAGATCCTTACCCGCAGCATCTCTCG