Detailed information on CNT3069516


BLAST search results

BLAST vs Swiss-Prot:
sp|P93604|LRK10_WHEAT, E-value = 7e-50

BLAST vs NONCODE:
NONPOPT000734, E-value = 5e-36

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690198Quercus suberOryza sativa41.596.0483.21131forward
CNT30314996Quercus suberCorylus avellana100.9526.9388.05318forward
CNT30699090Quercus suberQuercus lobata54.2943.5185.38171forward
CNT30713283Quercus suberMalus domestica golden70.1617.8986.43221forward
CNT30573490Quercus suberVitis vinifera84.137.2181.89265forward
CNT30707309Quercus suberPrunus avium72.0629.3383.7227forward
CNT3026124Quercus suberPopulus trichocarpa58.7326.6285.41185forward

Expression of CNT3069516

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MPRAMSCNFSQPRKQLESTEEMNFSSESFGKNS*

>peptide 2 (30 aa)
MRFNIKMEDSLITSLVKIFNSFCYAESNVL*

Sequence

>CNT3069516
AACCCATAGTCCCCCTAGCTGTGGTCATGGACACTGCACTTTGATCTTTTGCACACAACTTGGCTAGACCAAAATCAGAAATTTTTGGATTGAAATTTTG
GTCTAGCAAAATATTATGAGGTTTAATATCAAAATGGAGGATTCGTTGATCACATCCTTGGTGAAGATATTCAATTCCTTTTGCTATGCCGAGAGCAATG
TCTTGTAACTTTTCCCAACCAAGGAAACAGTTAGAATCTACTGAGGAAATGAACTTCTCTAGTGAATCATTTGGTAAGAACTCATAAACTAGAGCTCTTC
TAAATCCATCAGCAC