CANTATAdb - search

Detailed information on CNT30695064

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30102692	Oryza sativa	Oryza rufipogon	44.88	56.44	99.69	320	forward

Expression of CNT30695064

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MVFQELDNQVAYLGFICVGARVYLELLPKLGVQSHKLVPFKPNLQV*

>peptide 2 (42 aa)
LSHAGHHLAMPNLLYRSNTNQILAPPYLPPSDEPIFLVSPLL*

>peptide 3 (37 aa)
LSPMPATILPCPISFTGATLTKSSRHHTCLPPTNPFF*

Sequence

>CNT30695064
CTCTCTCCCATGCCGGCCACCATCTTGCCATGCCCAATCTCCTTTACCGGAGCAACACTAACCAAATCCTCGCGCCACCATACTTGCCTCCCTCCGACGA
ACCCATTTTTCTAGTTTCCCCTCTCCTTTAGCCATCCTATAAGCCACCATCACCACTTCTTTTACTCGCCAGAGTTGAGCTCTTGTCGTCGCCGTTCCGG
CCATCTCCCTTTCTCTCTCCACCAGACACCGACCTCCCCGGGTGCGTCGTGCTCGGGAACACGCGTGGACGCCGACGTCACCGCCCTCCAGCCACCGGAG
CGCCGCCGCCCCGATTGCCTTCTCCTCTCTCTTCTCTCGGCTCTCTCTGGAACAGAGAAGAAGAAAGGAACGGGAGGAAGAAGGAGAAGAAAAAGAAAAA
GACTGACAGTAGAGTCTATTGTCTTTTGGATGGCAACCTATGGTATTTCAAGAATTGGATAATCAGGTTGCCTATCTTGGATTTATTTGCGTTGGAGCAA
GAGTCTATTTGGAGTTGTTGCCGAAGCTGGGAGTTCAATCACATAAGTTAGTTCCCTTTAAACCTAATCTTCAAGTCTAGTATAATTAGATGGTTTAATT
CTATAGTAAAACAGCAAAGTTGGATCATCATATAGCTTCTGCTGTAATAGTTAACCACAAACTTGTAAATATCCTATTATTTTATATAAAGATATCTCCT
TTGGAGTCTTGAC