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Detailed information on CNT30694984

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30677148	Oryza sativa	Setaria viridis	16.19	73.5	89.12	147	forward
CNT30524398	Oryza sativa	Setaria italica	56.39	66.32	81.64	512	forward
CNT30226387	Oryza sativa	Hordeum vulgare	22.47	31.38	85.29	204	forward
CNT30248128	Oryza sativa	Avena sativa	20.81	28.08	82.01	189	reverse complement
CNT30342629	Oryza sativa	Eragrostis tef	27.75	61.76	86.51	252	reverse complement

Expression of CNT30694984

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MHGKTHICISPRYATKSVSTYKNALNRVTSVNLPESARIHGKQQVFLQTESEPPAAIQPKQHAFAREDMQQPHCAAVA*

>peptide 2 (42 aa)
MGNNKCSCRLSRSHQQQYNQNNMLLLERICSSRTVLRWRSRQ*

>peptide 3 (36 aa)
MLVSAHMHDIHRVETNRWIHYRSPHMVNNLLKITLT*

Sequence

>CNT30694984
GCTAAGAATAAATTAAGTAAAGAACATGCATACACAAATAATATTAATCATGTCGTAATAAATTGCTAAGGTCAGAGACCATCGGATGACACAATGGACA
GTGCTATGGCCTTATTAAAAGCAGCAAGAGAAATTAAATATGCTTGTGAGCGCACACATGCACGACATACATAGAGTTGAGACCAACAGATGGATCCACT
ATAGATCGCCCCATATGGTCAACAATTTATTGAAGATAACATTAACATAACTTGGCCATAACTTGAAGCAAAACAACATATTCTTATGAAAGGCATTAAG
ACTGGTAGCAATGCAAATATGTTGTTTTAGGCTTGTCCTTCCATCTTAGCAAGAACTCCCATTTCGTCCATCTTAGCAAGAACTCCCATTTCGTCCATCT
TAGCAACAACTGTGAAATTAAAATATGGAAATCCCATTAGCGCATTAGTTAATTTTGTAGTGGAAGTAGAGCATAAGATGTCTTCATGTTGCAAGATATA
TGCCTGAAGTCGTGAGATTGGAAGTGAAGTCAACAAAGTACATTGAGGAAAATGCATGGAAAGACACACATATGTATTAGTCCACGATATGCTACAAAGT
CTGTCTCTACATATAAGAATGCATTGAATAGAGTGACTTCAGTGAATTTACCAGAATCGGCCAGAATACATGGGAAACAACAAGTGTTCTTGCAGACTGA
GTCGGAGCCACCAGCAGCAATACAACCAAAACAACATGCTTTTGCTCGAGAGGATATGCAGCAGCCGCACTGTGCTGCGGTGGCGTAGTCGACAGTGAGG
CTCAAGATGACCATGCACATGATCACCATCGAAGTGGTAGTCCTCTTTCCCTCCATTGCCTCCCGCTGCTGATGCTACCTTCCCTGGTTACCTAGCTATG
TTTCTTAG