« Back to Oryza sativa search


Detailed information on CNT30694973


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N6|40G2_ORYSJ, E-value = 8e-92

BLAST vs NONCODE:
NONZMAT000139, E-value = 5e-63

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672063Oryza sativaSetaria viridis27.4744.7790.91231forward
CNT30289434Oryza sativaTriticum aestivum28.6641.6292.95241forward
CNT30221546Oryza sativaHordeum vulgare24.3889.9194.15205forward
CNT30554471Oryza sativaOryza glaberrima37.2256.8199.68313forward
CNT30436341Oryza sativaAegilops tauschii21.8860.5394.02184forward
CNT30251924Oryza sativaAvena sativa28.0643.3893.22236forward
CNT30658643Oryza sativaTriticum dicoccoides28.0653.2791.1236forward
CNT30450022Oryza sativaSaccharum spontaneum27.8222.6393.59234forward
CNT30680880Oryza sativaTriticum urartu28.0645.6591.1236forward
CNT30596591Oryza sativaOryza meridionalis27.9449.8997.87235forward
CNT30370660Oryza sativaOryza glumipatula41.0260.199.42345forward
CNT30148227Oryza sativaBrachypodium distachyon20.3367.8689.47171forward
CNT30102628Oryza sativaOryza rufipogon80.3853.2799.85676forward
CNT30577143Oryza sativaOryza barthii38.7664.3100326forward
CNT30496422Oryza sativaDigitaria exilis27.1136.9588.6228forward
CNT30117165Oryza sativaOryza nivara36.3968.3100306forward
CNT30593977Oryza sativaEragrostis curvula26.1699.190.91220forward
CNT30604388Oryza sativaOryza punctata18.5546.9998.08156forward
CNT30556620Oryza sativaPanicum hallii26.2822.4694.12221forward
CNT30551356Oryza sativaOryza brachyantha18.6745.3897.45157forward

Expression of CNT30694973

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLFTMRMQRKPLPTSLLSVHSTDSSWYSGL*

Sequence

>CNT30694973
GAGAATAATTATTCTGCACCAGATTCGTTGATATCAACTTGAGCCTTGATAGAGAGCTGGATCGATGTATCGATCAGCTCAGTAGTAGGGCTGGATCTTC
CAGCGCTGGTTGTCGCCCTCGCACCACTTCCAGAGCACGATGTCGGTGCCGTCGCGGACGCCGCCGTGGTACTTGTCGCCGTGGAAGGCGTCGAAGTTGA
GGTAGATGTTGTTCACCATGCGGATGCAGCGGAAGCCCTTGCCCACATCCTTGCTCTCCGTCCACAGCACAGACTCGTCCTGGTACTCTGGGTTGTAGGG
AACCAGCTTCACCTGCATGCGCAGAGAAAATCGTTCGTTGTGATTCAGAGATTCGTTGCATATGTAAGAAAATATTTATTTTGTAAGAAAAGATTTGCTC
ACCGGGTGGCCCTGTCCGGTGGAGTGCTTGATGGCTTCGCCGGTGACCTTGTTGACCAGCGCGAACGCCGGGTAGCCTTCCTCGTCCCTGATCTTGTTGC
TGTGCCTCATGTCCTTGATCCAGTGCTACAAACCACAACCACAAATCTCTCAAGGTTTTTCTCTATCTGAATAGTAGTATATAATTAAGAGGAGAATACG
TACCTGGTAGTCGTCCCTGGGGTTCTTGGGGGCGAGGCAGGCGGTGCCGTTGCGGACGGTGAGGCAGTAGTTCTCGTTGGCGCGGCAGAAGATCTTGAAG
ATCTGGTTCGGGTCCGACGGCGCCGCCGGTGCCTGGTTGTGGTGGTGCCCGAACCCAAACATCTTCGACCCTTAATTCGATCGGTGCAACTCGCGACTCG
CGAGAGAAATGTTTTTGTGCTGCGACTGCGAGCGATGATGC