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Detailed information on CNT30694968


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30109903Oryza sativaOryza longistaminata87.0191.4397.8683forward
CNT30102658Oryza sativaOryza rufipogon95.9210099.87753forward

Expression of CNT30694968

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MPPLVRSDGAQHRCGLLRSVSTIRPLRLPHQEPQGPRHLLLPCLG*

>peptide 2 (50 aa)
MVMELLLFGEDRMVAKIGQQCMQLPSSFLKFMDKSDFGTWELSLWLYSMF*

>peptide 3 (81 aa)
GKVDIPAQYPQTLGILVHHPEQHTAASSRLERRPSRRCSSRRPPARHTASARAGASRRFSLLLSPQMTPPPLTVDAASRQI*

Sequence

>CNT30694968
GGGAAGGTGGATATCCCGGCCCAATACCCCCAAACCCTAGGGATATTGGTCCACCACCCTGAGCAACACACCGCTGCCTCTTCTCGACTGGAGCGGCGCC
CAAGCCGCCGCTGCTCGTCCCGTCGCCCGCCGGCGCGGCACACCGCATCTGCTCGCGCCGGCGCCTCACGTCGCTTCAGCCTCCTCCTCTCGCCACAAAT
GACGCCGCCTCCTCTCACCGTAGATGCCGCCTCTCGTCAGATCTGACGGAGCTCAACATCGGTGCGGCCTTCTCCGTTCGGTCTCCACCATCCGGCCACT
GCGTCTTCCCCATCAAGAACCTCAAGGACCTCGTCATCTTCTACTACCTTGTCTAGGTTGAGGAGCTGGCTGGCTGACAGAAACATAGTACCATGGTCAT
GGAGCTACTATTATTTGGTGAAGATCGAATGGTGGCAAAGATAGGACAACAATGCATGCAGTTACCATCTTCATTTCTTAAATTTATGGACAAATCAGAT
TTTGGGACCTGGGAACTTAGTTTGTGGTTGTACTCAATGTTCTAGGTGTTGATGTCCTTTGCTTCCGATTTTATTTTACCTTACTGTGGTGATGTATAAG
AAAAACTTCTCAGTGGGCTCTTTGCTAAACACTAAAATTTAAATGCTTGTAATATTGTTTGGAGGGCACAGATTGACTTACCACATGTGAATTTGTCAAC
TGATACAATGCATAGCAGTGTTAATTATCGTTTTAAAAACTTGGCAGTATTTTTATTTTCTTTATTTAATGAACTGTTTTCTTAA