Detailed information on CNT30694964


BLAST search results

BLAST vs Swiss-Prot:
sp|P42051|PSAK_CUCSA, E-value = 4e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672228Oryza sativaSetaria viridis13.2726.3890.786forward
CNT30520562Oryza sativaSetaria italica18.3626.5691.6119forward
CNT30289849Oryza sativaTriticum aestivum15.742593.14102forward
CNT30436322Oryza sativaAegilops tauschii14.5122.2293.6294forward
CNT30242614Oryza sativaAvena sativa15.5928.2994.06101forward
CNT30659915Oryza sativaTriticum dicoccoides15.928.3793.2103forward
CNT30339854Oryza sativaEragrostis tef13.5823.9189.7788reverse complement
CNT30102685Oryza sativaOryza rufipogon35.9644.3100233forward
CNT30581501Oryza sativaEchinochloa crusgalli18.0626.3592.31117forward
CNT30118070Oryza sativaOryza nivara76.0888.1995.54493forward

Expression of CNT30694964

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MIWSRTPMFLRPRTTPTPMMWPTAPQAGVARLQLQPRRRLPVRRRRQPEPPREQHQRRRRHHDLHRPPK*

>peptide 2 (32 aa)
MIITSSITQALMHRLHIGVLIRVTSLMNLISR*

>peptide 3 (37 aa)
LCESSCNFAVAKMYNFQVTKNGIGMYKINIKRKRFRV*

Sequence

>CNT30694964
CTATGTGAAAGCTCATGTAATTTTGCAGTTGCAAAAATGTACAACTTTCAGGTGACAAAAAATGGCATAGGGATGTACAAAATAAACATTAAGAGGAAAA
GGTTTCGTGTTTAGAACTTTAAAACCAAGCAATCAAAAACATTTTCTTCCTCGAAGATCCAACAACAAAGCTCTGCATCAAGAAACATTCCATTGGTTGA
CAGAAACAAAATTAAGCTAGATAAGCACTGATTCCACGCACAATTTACATGATCATTACATCGTCCATCACACAGGCACTCATGCATCGATTACACATAG
GAGTATTGATTCGTGTGACTAGCTTAATGAATTTGATTAGCCGATGATCTGGTCCAGGACGCCGATGTTCTTGAGGCCGAGGACGACGCCGACGCCCATG
ATGTGGCCGACGGCGCCGCAGGCCGGAGTCGCGCGCCTCCAGCTTCAGCCCCGCCGTCGACTTCCTGTTCGCCGACGGCGCCAGCCCGAACCTCCCCGCG
AACAGCATCAGCGTCGTCGTCGTCACCATGATCTGCATCGCCCCCCCAAATAAATTGCCCATCACATTCCATTCACATCAAGCCTAATCACGTCGTTGAA
TTCAGCTAATTAACCACACTGATAAATTAATTCAGTGTGTGTGTTCTT