CANTATAdb - search

Detailed information on CNT30694855

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000979, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30102580	Oryza sativa	Oryza rufipogon	100	38.46	100	510	forward
CNT30577054	Oryza sativa	Oryza barthii	100	46.62	99.8	510	forward

Expression of CNT30694855

Peptides detected in this lncRNA

>peptide 1 (98 aa)
NSLRMQLPSDLTNHTYTFSEHPIDRSEPVAVKPTPSFVAEPSSPLPPLSRRPDLTVLGSSFPQSRRRTNHFYALLRRQNHHLRVRNGVICIFSFGWVG*

>peptide 2 (50 aa)
MESSAFSLLVGSAENAPSAVGIAVNLAGRRGLLLLLPLFSPPSKRQVGPI*

>peptide 3 (30 aa)
IPCACNSLAISLTTHTPFLSIPSTGASPSP*

Sequence

>CNT30694855
AATTCCTTGCGCATGCAACTCCCTAGCGATCTCACTAACCACACATACACCTTTTCTGAGCATCCCATCGACCGGAGCGAGCCCGTCGCCGTGAAGCCGA
CGCCATCCTTCGTCGCCGAGCCATCTTCTCCACTGCCGCCGTTGTCCAGACGACCAGACCTCACCGTGCTGGGTTCAAGCTTTCCTCAAAGCCGTCGCCG
CACAAATCACTTTTACGCGCTGCTCCGGCGACAAAACCACCATCTACGGGTTCGCAATGGAGTCATCTGCATTTTCTCTTTTGGTTGGGTCGGCTGAGAA
TGCACCGTCCGCCGTCGGCATCGCCGTGAACCTCGCCGGCCGGCGAGGTCTGCTCCTGCTGCTGCCGCTCTTTTCTCCCCCGAGCAAACGACAGGTGGGG
CCCATTTAATTAGGCACTAAGGACTGTGATTAGAAATAGTTTAAAACATGTAAGGTTGAAATTGTAAAATCGTATAGCATGACATGTGGACCCAAGAACT
TGCATGCAAC