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Detailed information on CNT30694854


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84S11|CSLF2_ORYSJ, E-value = 9e-115

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30366555Oryza sativaSorghum bicolor13.8131.4986.4974forward

Expression of CNT30694854

Peptides detected in this lncRNA

>peptide 1 (30 aa)
SRSSSPATSARRSASGRRAPTARRTWRPPP*

>peptide 2 (83 aa)
REVVLRRPRLDAVLPAEGHPQLGELGDLHHSLVVDQRPAVVGEVASVPVHRVVGGENGEDGVHGVEYRLVDRVDGGDEDVDAG*

>peptide 3 (40 aa)
MSGTRLMGLSFGSWLSTHEKPNQTSPTMDIVHSHTPSRFL*

Sequence

>CNT30694854
TCGCGAAGTAGTTCTCCGGCGACCTCGGCTCGACGCAGTGCTTCCGGCAGAAGGGCACCCACAGCTCGGCGAACTTGGCGACCTCCACCATAGCCTCGTA
GTGGACCAGCGTCCCGCCGTCGTCGGAGAGGTAGCAAGCGTACCTGTCCACCGGGTAGTCGGCGGCGAGAATGGAGAGGATGGTGTTCACGGTGTAGAGT
ATCGGCTCGTCGACAGGGTCGACGGTGGTGACGAAGACGTCGACGCCGGGTAGGTCGCCGGAGTGCCGGTCGGCGAGGGCGGCGATGTCCGGGACGCGCT
TGATGGGGCTCAGCTTCGGGAGCTGGTTGAGCACCCACGAGAAGCCGAACCAGACGTCGCCGACCATGGACATTGTCCACAGCCACACGCCGTCGCGGTT
CTTGTGACGTACGCGCCACGCGAAGAAGGCGACGATGGCGATCAGTCGAAGAAGGATCAGGAACCTGTAAGGATGAAGGATGCTGCCCTTGACCTTGTAC
GTCCGGAACAGCGGCGGCCGGGCGGCGCCATCGCCG