« Back to Oryza sativa search


Detailed information on CNT30694848


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000981, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554546Oryza sativaOryza glaberrima21.0544.3386.61336forward
CNT30108895Oryza sativaOryza longistaminata52.1938.9395.68833reverse complement
CNT30101475Oryza sativaOryza rufipogon16.0458.3194.14256forward
CNT30578555Oryza sativaOryza barthii13.9710093.72223forward
CNT30117422Oryza sativaOryza nivara23.7585.9486.81379forward

Expression of CNT30694848

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MMSVTIIHQINVIAVVDASLGGELMLLSNSSKPKYFKLLK*

>peptide 2 (81 aa)
MASRAGGNTNRRRWRQAGGGVVDAQQRRHNRPAVQTETPVGGGEGKPVGEDVDAQQRQHNRPAVQAEAPVGGGRGGRSVKT*

>peptide 3 (45 aa)
MMTHISGDGDVANREEDSISRRHNRPAMQAETPVGGGRGGRSVKT*

Sequence

>CNT30694848
CATAGTAGGTCAACCATGAAGGTGAAATAATAAGTCGGCGAAAACATAATCATCCATTAGCAATAGCGGAGATGTCAGGGCCGATGAAGCAGAGGTGCTG
GTGATGATGTCAGTGACAATAATCCATCAAATTAATGTTATAGCTGTTGTAGATGCTTCACTTGGAGGAGAGTTGATGTTGTTGTCCAACTCGTCCAAAC
CAAAATATTTCAAGTTGTTGAAGTAGAATGTCTGCTCTATATATTATCAAAGATGAAGATAATGACTCCTGGAGTTGACTCGTTGGTTGATGAATTGATT
TCTTCAGCTTGACATAAAATTTGTCAAATTTTGAGCCTTGTATTTGTGTAGCCCCCGACTCTTTGGTTAGTTGGGAAACAACTGAACATAGAGTCGAGAA
TTATAGCTTCTTGTCGTCGAGTAGTCATTGCTTGATTGAAGATATGTGTTGAAGATGTCCAAGTAGAAATCCTGAATATTGGAGAGCCTCTTGTTGTAGT
AAAATAACATGGCATCACATGCCGAGATGTCGAGGCTCACAAAGACGTCGTGGTTGGTGAAGTAGCAAAACTTGCGAAGTAGCAGCAATAGAGTTTGCCA
GTGCCGAAGATAATAAAGATGAAGTCGCTCTACCATGATGACAAAGTTGCATTGCCGTGATGAAGTGAACACGAGTCGTCGGCAACAGAAGCAAACTGGT
AGTGAAGACGCGCAGTTGTGAAGATAAAAGCACTAGTCGGCGACAGCATAACCAGTCGGCGACGGAAGACGATGATGTTCATCAGTAGTGGTAGCTGTCT
AAACCAGACGTAGAGGTGAGAGCACTAGTCAGCAGCAGACGTAGACAGCTTGTGTTGAAGATGATGACGCATATTAGCGGTGACGGCGACGTAGCCAACC
GTGAAGAAGATAGCATCAGTCGGCGTCATAACAGGCCAGCTATGCAGGCGGAAACACCAGTCGGCGGTGGACGAGGCGGCCGGTCGGTGAAGACGTAGAC
GCCCAACAACGGCGGCATAATAGGCCAGCCGTGCAGGCGGAAACACCAGTCGGCGGCAGCGAAGGCAAGCCGGTCGGTGAAGACGCAGACGCCCATCAAC
GGTGGCATAATAGGCCAGCGTGCAGGCGGAAACACCAGTCGGCGACGGTGGAGGCAGGCCGGTGGTGGAGTCGTAGACGCCCAACAACGACGGCATAATG
GCCAGCCGTGCAGGCGGAAACACCAATCGGCGGCGGTGGAGGCAAGCCGGTGGTGGAGTCGTAGACGCCCAACAACGACGGCATAATAGGCCAGCCGTGC
AGACGGAGACACCAGTCGGTGGCGGCGAAGGCAAGCCGGTCGGTGAAGACGTAGACGCCCAACAACGGCAGCATAATAGGCCAGCCGTGCAGGCGGAAGC
ACCAGTCGGCGGCGGACGAGGCGGCCGGTCGGTGAAGACGTAGACGCCCAACAACGGCGGCATAAAGGCCAGCCGTGCAGGCGGAAACACCAGTCGGCGG
CGGCGAAGGCAAGCCGGTCGGTGAAGACGTAGACGCCCAACAACGGCGGCATAAAGGCCAGCCGTGCAGGCGGAAACACCAGTCGGCAGCGGCGAA