Detailed information on CNT30694818


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003396, E-value = 7e-129

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30102359Oryza sativaOryza rufipogon11.8845.6289.04219reverse complement
CNT30116818Oryza sativaOryza nivara2.8720.5410053forward

Expression of CNT30694818

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MRVSRHSSLAGASVLAPGDGTLVLVRYMPGFIPTIISKTLYEEGRTCRLLN*

>peptide 2 (80 aa)
MVLAISDDVAHSSFKQLAAFTYLESLWSEVTQALATIPGQHSADRPDIINHVFHVKLHLFMNDIVKKKFFWPCHYSCVHN*

>peptide 3 (38 aa)
MDLVVMQIHIVHAWLTVNAQRITQRNIVIKQQSCQMAM*

>peptide 4 (39 aa)
MATDESLKYPRHVSSQRWSICDLLSRSLQIDPMDSILIY*

>peptide 5 (46 aa)
MLGQKNDIIVAKNEISLDNRHVVPHNIDLLVKYEAHVNMERDNRDGM

>peptide 6 (48 aa)
MMHGPCGDANPYCSCMVDSKCSKNYPKEYCDKTTILPNGHVRYARPKK*

Sequence

>CNT30694818
CTCGTTTATCCGGTCTGTGACCGGTCACAGATCGGTCAGATTGCGGGTTAGGAGGCAACAGGCGATCTGACACACGCCTCGCCCCGTCCCGTCAGGATGA
GAGTCTCTAGGCACTCGTCCCTAGCCGGAGCCAGCGTGCTAGCTCCTGGAGATGGCACGTTGGTCCTGGTCAGATATATGCCAGGCTTTATCCCAACCAT
TATAAGCAAGACGTTGTATGAAGAAGGGCGAACATGCAGATTGCTAAACTGACACGTGGTGGACAAAGGTGACCGGTCTGTGACTGGTCTGACACTGGTT
ATGTCGCCGGAAGACAACCGTGTTCCCACGTTGCAGCTGCTTCCGGCGGAGTGGAGGTAGGTATGGGCCGTCCCATTAGAAGGGTCACTCGGGCAGCAAC
CGTTGCAAATCTCCGCCCATTTATGAAGAGATGACAGGGTGATCCCCGAGGTCAGACGAACGAGGACGCGTGGCCACACTCAAAAACAGGCAGTGTTTCA
GCTTCCAAGAGAAGGCAAGCCAAGTTTTACTATAGATAGGATGGGCCCCCACCCAAAAAGAGAGAGAGGTAGAAGTGGTGCATGTGGTATCCCCTTAAGA
TATAAAAGGAGGACCTTGCCCACTTAAGAGGGAGAGGCCGGAAGGGGGGATGATCTGGAGAGGGGATCCCACGAGAAAAAAAAAAGGAGAAGAGGGTTTT
TAGAATAAGAGCTCTCTGGCTCTCCAGCTCTTTGTAGCTTCTTCATACACAGATCCACCAGAACACAGGAGTAGGGTATTACGCTTCTCAGCGGCCCGAA
CCTGTATACATCGCCAGTGTCTTGTGCTTTTTCCATTCTCGCGAACTTTCCACAGACTAGGAGCTTAGAATCTCACCCAGGGCCCCCGGCCGAACCGGCA
AAGGGGGGCCTGCGCGGTCTCCCGGTGAGGAGCCCCACGCTCTGTCAGCTACGAATAAATCTACAAAAGTTTTACTTATAAATTAATTTTAATTTTCTAA
TAAGCCAAATAAGCCATTTTAAACAAAATGGCAACCGATGAGAGCCTTAAATATCCTAGACATGTGAGTTCTCAAAGATGGAGTATTTGTGACCTTTTGT
CTCGAAGCCTCCAGATTGACCCAATGGATTCTATTCTCATATATTGATCCAACGGTCCTTTTGTTTTACCAGTCTCATCCGATGGTGCTTGCAATTTCCG
ACGACGTGGCTCATTCTTCTTTCAAGCAGCTTGCTGCTTTCACCTATCTAGAATCCTTATGGTCAGAGGTAACACAAGCTTTGGCTACCATCCCTGGGCA
ACACTCAGCTGATAGGCCTGATATTATTAATCATGTATTCCATGTTAAGCTGCACCTCTTCATGAACGACATCGTAAAGAAGAAATTTTTTTGGCCCTGT
CACTACAGTTGTGTACACAATTGAATTTCAGAAGCATGGACTTCCACATGTTCACATCATATCGTGGTTAGATAAGAGTGGTCCATTGACACTTGCTGAT
ATTGACAGACTAATATCGGCACAGCTTCCAGATCCATCCATTGATCGAGTTGGTTATGACGCTGTTGCGGCATTCATGATGCATGGACCTTGTGGTGATG
CAAATCCATATTGTTCATGCATGGTTGACAGTAAATGCTCAAAGAATTACCCAAAGGAATATTGTGATAAAACAACAATCCTGCCAAATGGCCATGTAAG
GTATGCTCGGCCAAAAAAATGATATAATTGTTGCCAAAAATGAAATTTCTCTTGATAATCGGCATGTTGTCCCCCACAATATCGATTTATTAGTCAAATA
TGAGGCGCATGTCAATATGGAAAGAGATAATCGTGATGGAATGG