Detailed information on CNT30694718


BLAST search results

BLAST vs Swiss-Prot:
sp|Q96499|RL44_GOSHI, E-value = 9e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671781Oryza sativaSetaria viridis32.9359.5788.32137forward
CNT30401984Oryza sativaBeta vulgaris38.2277.5683.02159forward
CNT3087688Oryza sativaVigna radiata35.5868.5283.11148forward
CNT30668197Oryza sativaTriticum dicoccoides30.0557.691.2125forward
CNT30311937Oryza sativaCamelina sativa39.6669.6287.27165forward
CNT3078180Oryza sativaBrassica juncea14.6626.0786.8961reverse complement
CNT30452338Oryza sativaSaccharum spontaneum42.5549.1795.48177forward
CNT30102486Oryza sativaOryza rufipogon62.98100100262forward
CNT30175989Oryza sativaVigna angularis38.4646.1183.12160forward

Expression of CNT30694718

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MFLMKRDSKTQHCAITYKLSQYLLVENRLGLTTIS*

Sequence

>CNT30694718
CACAGCTGAAAGTCATATACTTTAAAACTACGTGATGGTTATTACCACATGTTTGCATTGAACAGACACATCAATCATGACACCATATGTTTCTAATGAA
GAGAGACAGTAAGACACAACACTGCGCAATCACATATAAACTGTCACAGTACCTTCTTGTGGAAAACAGGCTTGGTCTGACCACCATATCCTGACTGCTT
ACGGTCATAACGGCGCTTTCCCTGGGCAGACAGGCTGTCCTTACCCTTCTTGTACTGAGTGACCTTGTGAAGGGTGTGCTTCCTGCACTCCTTGTTCTTG
CAGTAGGTCTTCTTGGTCTTGGGAACCGTACCATTTTCACGGCCGCGGGGAGGGGGCGGCTAGGGTTTCGGAGGCAAGTGGCGGCGGCGGGGGAGGAGAA
GGAGAGAGAGGTCTGC