Detailed information on CNT30694701


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30105612Oryza sativaOryza longistaminata57.1860.1696.35219forward
CNT30102536Oryza sativaOryza rufipogon71.5428.999.27274forward
CNT30577918Oryza sativaOryza barthii80.4267.2594.16308forward
CNT30117256Oryza sativaOryza nivara97.1380.6999.19372forward

Expression of CNT30694701

Peptides detected in this lncRNA

>peptide 1 (56 aa)
FLARIHSPPPTLRFQSGREATREEKRGNGAAAHRRQRRRRPLPIRRPRSPPPSRRG*

>peptide 2 (59 aa)
VPGPDSFPTSDPPVPIRTRGDARGEARKRRGGAPTSTATATASHPTSTLSAAFSPRIIS*

>peptide 3 (99 aa)
SWPGFIPHLRPSGSNPDARRRERRSEETARRRTDVNGDGDRFPSDVHALRRLLAADNQLIFPNVDGLLPEGPEEGEARLISDEVLKRMCLILKYITVHA*

Sequence

>CNT30694701
GTTCCTGGCCCGGATTCATTCCCCACCTCCGACCCTCCGGTTCCAATCCGGACGCGAGGCGACGCGAGAGGAGAAGCGAGGAAACGGCGCGGCGGCGCAC
CGACGTCAACGGCGACGGCGACCGCTTCCCATCCGACGTCCACGCTCTCCGCCGCCTTCTCGCCGCGGATAATCAGTTGATATTCCCAAATGTCGATGGA
TTGCTACCAGAGGGACCGGAGGAAGGCGAAGCTAGATTGATTAGTGATGAAGTCCTGAAAAGAATGTGCTTAATCCTGAAATATATTACTGTTCATGCTT
AACTAGATAGAAATATGCATGATGTTCTGAATTCTGATGAATGATGACAGCAACTGAATATGGTGAAGAATTGTCATGATGCT