Detailed information on CNT30694698


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006944, E-value = 2e-116

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370407Oryza sativaOryza glumipatula10076.6295.76354forward
CNT30103177Oryza sativaOryza rufipogon93.2297.6394.55330forward
CNT30578316Oryza sativaOryza barthii93.2210096.97330forward

Expression of CNT30694698

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MMKALVSSSCLPSSACGRRPSLPLFFVCLHVCWAFAAHVIN*

>peptide 2 (42 aa)
FFLFVGRVDAAASEDPLFVEVEADVWESEQEEVFLDDEGFGV*

Sequence

>CNT30694698
CTTTTTCCTTTTTGTTGGTCGTGTAGACGCTGCAGCTTCAGAAGATCCGCTCTTCGTGGAGGTTGAAGCCGACGTTTGGGAAAGCGAGCAAGAAGAGGTG
TTCCTGGATGATGAAGGCTTTGGTGTCTAGCTCGTGCCTGCCATCAAGCGCATGTGGTCGTCGCCCTAGTCTTCCGCTGTTTTTCGTTTGTCTTCATGTG
TGCTGGGCCTTCGCCGCCCATGTAATAAATTAACTATTTACGCTTCCGCTTGTTAAACTCTGAAATGTATCAACTTTTGGTGTACCTTGCCTCCTGGGAC
AAGGAATAATACACGCACGTAAGGAACGCCCGTTGGGTTAATTCCGGTCGTGAC