Detailed information on CNT30694654


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554473Oryza sativaOryza glaberrima95.9887.4299.64549forward
CNT30369472Oryza sativaOryza glumipatula95.9896.1599.64549forward
CNT30102681Oryza sativaOryza rufipogon97.999.47100560forward
CNT30577129Oryza sativaOryza barthii93.7196.499.63536forward
CNT30117222Oryza sativaOryza nivara93.8896.0699.44537forward

Expression of CNT30694654

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MIMSPDNGEPFQNFLVELSSLMKFKEIYRAERSAFRPNWE*

>peptide 2 (29 aa)
MCNACIIFFCLLIYSTILLPLSYKKTTKIP

>peptide 3 (44 aa)
RDKASTLSMNAADSSLLAAPPTPPSRGQYRLRLLIAHLIASVEN*

Sequence

>CNT30694654
AGAGAGACAAGGCCTCAACCTTATCCATGAACGCGGCCGATAGCTCGCTGCTCGCTGCCCCTCCCACGCCTCCCTCGCGCGGACAGTATAGGCTAAGATT
ATTGATTGCCCATTTGATTGCATCTGTGGAGAACTGAAGATATCCAGCTGAATTTTCTTGTGGACATAACAATCAAAAGCATGAGAGGAATCGAACAAAG
ATTGAATTTGTGTTTTTGAGAAGCCTACTTAGGTCAGCCACATCACTCCGACGGATCACATTGGCTTTCCATGGTATGATTATGAGTCCTGACAATGGGG
AGCCATTCCAGAACTTCCTGGTTGAACTATCCAGCCTGATGAAATTCAAGGAAATTTACCGCGCTGAGAGATCCGCATTCAGACCAAACTGGGAGTAAGC
GTGATCATTCAGAAACAGCGTGCTACAGATCAACACCAAAATTCCTAAATTGCATGTCCTTGCCAAAATTGTAATAGACAATGTGTAATGCTTGTATTAT
ATTTTTCTGCCTTCTAATATATTCGACAATACTCTTGCCGCTTTCATATAAAAAAACCACCAAAATTCCGAA