Detailed information on CNT30694562


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002862, E-value = 5e-104

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3068503Oryza sativaLeersia perrieri17.7529.3283.84229forward
CNT30102223Oryza sativaOryza rufipogon21.4727.1699.64277forward

Expression of CNT30694562

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MNRSVFRKTGEPERFWRTGRLVSEGKYIPQNSHLGHFSPTSPIL*

>peptide 2 (30 aa)
MKIINKNRNLKKKNGSEKKKKKKKDHLRRG*

>peptide 3 (70 aa)
EDITSSDITITTLYTNQQKLHMFYIRFTYYIFEQTLLHNEFHVFSFTGVLAWVKENRPSVKHTWMIEEVD*

>peptide 4 (48 aa)
MAISQLVVSSSYINSTYIKSTYRNFTYIKSTYRNFTYIKSICICRKFS*

>peptide 5 (29 aa)
MLCDDDHGIGNGEHLCCAGGAVDVTTRNKI

Sequence

>CNT30694562
TGAGGACATAACTAGCTCGGATATAACTATAACTACCTTATATACTAATCAACAAAAGTTGCATATGTTTTATATTAGATTTACTTATTATATATTTGAA
CAAACGTTGTTACACAATGAGTTTCATGTGTTTTCGTTTACAGGGGTACTTGCTTGGGTGAAGGAAAATAGACCGAGCGTAAAGCATACATGGATGATTG
AAGAAGTTGATTAGGGACCAAACCAAGACATTCTCCAAGTCTTCTTTCATCTCACATTCTCACCACGTCACTTTTGGTCCATAGAAGACAAGAGATAAAG
TTCTACACGTTTTGGATTCGGATTCGGGCACAACTAGCTCGGATATAACCATGACTATCTAATATAGAACATATACACCTTTGGTTGATTAATATATAAG
ATAGTCATGGCTATATCCCAGCTAGTTGTGTCCTCATCATACATAAACTCTACATATATAAAGTCTACATATAGAAACTTTACATACATAAAGTCTACAT
ATAGAAACTTTACATACATAAAATCTATATGTATATGTAGAAAGTTTTCATGAAATAATTCATATAAAAATGTTTTTGTTAAAGAAACAATGAAAATAAT
TAACAAAAATAGAAATCTGAAAAAGAAAAACGGTAGTGAAAAAAAAAAGAAAAAGAAAAAAGACCACTTAAGAAGAGGATAACTGAAAATTGGAAAGGAA
AGATCAATACCGCTCCCCCAGTTCCCCCTTCTCCGTACATCGTGCGTCTTTCATCCTCCTCGCTCCGACCAATTCGTGACATACATAGTGGGCGAACGTT
CGCCCACTAACCTTCTTGGAGGGGGGTGTCCGGGGAAGGGGCCAGGGGTTGGTTTTTCTGTGTACCTTCTTGGATCGGTTTGCTTTAAAGACCGTCCATG
TAATTGGACCGGAGAAAACTGGATGAACCGGTCGGTTTTTAGGAAAACCGGTGAACCGGAACGGTTTTGGCGAACCGGACGGCTCGTGTCAGAAGGGAAA
TACATCCCGCAGAACAGCCACTTGGGCCATTTCAGCCCAACTAGCCCAATACTGTAAGGTATCCTAGGGCTAGCTTTCCTTCTACCTCCCTTCTTTGCCG
TTCCCTTGCGCCGCCATGGCGCAGCACTGCAGCAACCAGCTGCCATAACTCACAGCTTGCTCTGTCTGGATTAGACGGTGACTGCGGCAGCTTGATGAAT
GCTTTGCGATGATGACCACGGCATTGGAAACGGCGAGCATTTGTGCTGCGCCGGCGGAGCAGTGGACGTCACTACTAGAAACAAGATTTT