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Detailed information on CNT30694488


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002574, E-value = 6e-53

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30106078Oryza sativaOryza longistaminata36.188.7387.7252reverse complement
CNT30104665Oryza sativaOryza rufipogon23.3511.3693.87163forward
CNT30574703Oryza sativaOryza barthii35.826.7888.8250reverse complement
CNT30116251Oryza sativaOryza nivara32.8115.0788.21229forward

Expression of CNT30694488

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MLICNSIMIVLALTCHPRQAACTTDRYHQSSSIRCWSR*

Sequence

>CNT30694488
GCAACAGTAAAATAATGTGCTATCTATAAAACATGTATATCTCAGCAATAGACTAGATTAATAGTAAACCACTTCAATGGTATGTTTACATGTATATCTA
TAGCTCTCTAATCCATTGCCTCGTTTTTCTCTATAGACTATCTAAAGATTAGTAGATAGCGTTGCTCTCCCTCTTCATTTAATCTTTTCCAATTAAGAAA
ATATGCTGACATAGATATATTGTAGAGAGTCTATAGATAACAATTCTGGGTGCCCTAATAGTTCATCACATATGTGCTCATGCTAATCTGCAACAGCATA
ATGATCGTATTAGCCCTGACCTGTCATCCGCGACAGGCTGCCTGCACGACCGACCGTTATCATCAATCATCATCGATCCGTTGCTGGTCCCGCTGAGCCG
TGGGCCCCACGTCGTCATCCGCAACCCGCCTACGCTAAGCAAAATCCCCAAACGGCCCCCACGTCTAACTGCACGCGTAACGGCGCTTCCCCCACCGCGT
ACTCCGTACTACCTCCGTCTCAAACCAAGTGTAGCCGTAGATATCTGTGTCCAACATTTGACCATCCGTCTTATTTAAAACATTTATGAAAAATTTGAAA
ATATTTAGTCACGTATAAAGTACTATTCATGTTTTATCATTTAATAGCAATAAAAATATTAATCATAAAAAATTTTCAAATAAGATGAACGGTCAAAT