Detailed information on CNT30694403


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674299Oryza sativaSetaria viridis11.8227.5796.6159forward
CNT30521727Oryza sativaSetaria italica20.0415.7285100forward
CNT30254859Oryza sativaAvena sativa13.6325.5695.5968forward
CNT306353Oryza sativaZea mays11.2224.3594.6456forward
CNT30364335Oryza sativaSorghum bicolor20.6411.8187.38103forward
CNT30370487Oryza sativaOryza glumipatula28.8615.06100144forward
CNT30110238Oryza sativaOryza longistaminata34.0724.6794.71170reverse complement
CNT30102287Oryza sativaOryza rufipogon54.1179.41100270forward
CNT30576871Oryza sativaOryza barthii53.3130.9399.25266forward
CNT30497096Oryza sativaDigitaria exilis20.0425.9186100forward
CNT30116039Oryza sativaOryza nivara78.3667.0799.23391forward

Expression of CNT30694403

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MVLGMMMSPMLLCHGSERWWRRRRPAGGSCSTTAPAGSARPPRCSSSARSSPLPPPPLASPPPPPPRTHQQEDEVGRRGGR*

>peptide 2 (37 aa)
KIKMDGFTREHPLLKLYITRPTSSCLPADHCVRTRAQ*

>peptide 3 (52 aa)
KLRWTDSQESTLYLSFTLQGQPAAACRPTTACARARNNQPITHSTHAHKNHP*

Sequence

>CNT30694403
AAAAATTAAGATGGACGGATTCACAAGAGAGCACCCTCTACTTAAGCTTTACATTACAAGGCCAACCAGCAGCTGCCTGCCGGCCGACCACTGCGTGCGC
ACGCGCGCGCAATAATCAACCAATCACACACAGTACGCACGCACATAAAAACCACCCATAGCCTTCACGTACGCCCGGACGCACGCACCGGTTCGTGCCA
AGCTCAAGGGTAGATGGTTCTCGGGATGATGATGTCGCCGATGTTGTTGTGCCACGGGTCCGAGAGGTGGTGGCGTAGGCGCAGACCGGCAGGCGGCTCC
TGTTCGACGACGGCGCCAGCAGGCTCGGCACGCCCACCGCGCTGCAGCTCCTCAGCCCGCTCGTCGCCATTGCCGCCGCCGCCGCTAGCTTCTCCTCCTC
CTCCTCCTCCTCGAACACACCAGCAAGAAGACGAAGTAGGAAGAAGAGGTGGCCGGTGAGTGGACGCCGGAATCCGTGGCGGGATATTAAGGGGGGAGC